Identification of Shewanella putrefaciens as a novel pathogen of the largemouth bass (Micropterus salmoides) and histopathological analysis of diseased fish by Xinyu Jiang, Xiaoyu Wang, Lei Li, Chen Niu, Chao Pei, Lei Zhu, Xianghui Kong

“…Based on the results of 16S rRNA sequencing and phylogenetic analyses, the isolate was identified as S. putrefaciens. …”
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Studies of Y-chromosome Polymorphism in the Context of History: Current State of the Discipline » by Zh.M. Sabitov

“…This article describes the methods of population genetics such as cluster analysis, phylogenetic networks, multidimensional scaling, calculation of “genetic” distances, TMRCA.…”
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Bringing dicynodonts back to life: paleobiology and anatomy of a new emydopoid genus from the Upper Permian of Mozambique. by Rui Castanhinha, Ricardo Araújo, Luís C Júnior, Kenneth D Angielczyk, Gabriel G Martins, Rui M S Martins, Claudine Chaouiya, Felix Beckmann, Fabian Wilde

“…Synchrotron radiation based micro-computed tomography (SRµCT), combined with a phylogenetic analysis, demonstrates a set of characters shared with Emydopoidea. …”
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Seeing without a Scene: Neurological Observations on the Origin and Function of the Dorsal Visual Stream by Robert D. Rafal

“…This tutorial considers what we have learned from patients with damage to the colliculus, or to the intraparietal cortex, about how the phylogenetically older midbrain and the newer mammalian dorsal cortical visual stream jointly coordinate the experience of a spatially and temporally coherent visual scene.…”
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The complete mitochondrial genome of Orancistrocerus aterrimus aterrimus and comparative analysis in the family Vespidae (Hymenoptera, Vespidae, Eumeninae) by Qiao-Hua Zhang, Pan Huang, Bin Chen, Ting-Jing Li

“…The study reports the complete mitogenome of O. a. aterrimus, compares the characteristics and construct phylogenetic relationships of the mitogenomes in the family Vespidae.…”
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Characterization of alphasatellites associated with monopartite begomovirus/betasatellite complexes in Yunnan, China by Gong Huanran, Liu Pei, Wu Peijun, Xie Yan, Zhou Xueping

“…On the basis of the phylogenetic tree of the complete nucleotide sequences, the alphasatellites were divided into 3 types with one exception. …”
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Low Genetic Variability of the Tundra Vole in Lithuania by Petras Prakas, Dalius Butkauskas, Laima Balčiauskienė, Linas Balčiauskas

“…The western site is subject to regular spring flooding. Phylogenetic analyses of the studied individuals placed them in the Central European phylogroup, suggesting that Lithuanian <i>A. oeconomus</i> originated from northeastern Poland. …”
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Large-scale analysis of NBS domain-encoding resistance gene analogs in Triticeae by Dhia Bouktila, Yosra Khalfallah, Yosra Habachi-Houimli, Maha Mezghani-Khemakhem, Mohamed Makni, Hanem Makni

“…Four additional conserved motifs were shown to be significantly present in all 199 sequences. Phylogenetic analyses, based on genetic distance and parsimony, revealed a significant overlap between Triticeae sequences and Coiled coil-Nucleotide binding site-Leucine rich repeat (CNL)-type functional genes from monocotyledons. …”
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Distribution, inducibility, and characterisation of prophages in Latilactobacillus sakei by Conrad L. Ambros, Matthias A. Ehrmann

“…All virions featured icosahedral, isomeric heads and long, most likely non-contractile tails indicating siphoviruses. By performing phylogenetic analyses with various marker genes as well as full prophage sequences, we displayed a remarkably high diversity of prophages, that share a similar gene module organisation and six different chromosomal integration sites were identified. …”
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Y-Chromosomal insights into the paternal genealogy of the Kerey tribe have called into question their descent from the Stepfather of Genghis Khan. by Maxat Zhabagin, Alizhan Bukayev, Zhanargul Dyussenova, Altyn Zhuraliyeva, Assel Tashkarayeva, Aigul Zhunussova, Baglan Aidarov, Akynkali Darmenov, Ainur Akilzhanova, Uli Schamiloglu, Zhaxylyk Sabitov

“…Our results reveal two prevalent phylogenetic lineages within the C2a1a3a-F3796 haplogroup, also known as the C2*-Star Cluster (C2*-ST), which is one of the founding paternal lineages of the ancient Niru'un clan of the Mongols: C2-FT411734 and C2-FT224144, corresponding to the Abak and Ashamaily clans. …”
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New complete genome sequences of human rhinoviruses shed light on their phylogeny and genomic features by Zdobnov Evgeny M, Perrin Luc, Van Belle Sandra, Cordey Samuel, Gerlach Daniel, Junier Thomas, Tapparel Caroline, Kaiser Laurent

“…The whole-genome maximum-likelihood phylogenetic analysis suggests that HRV-B and human enteroviruses (HEV) diverged from the last common ancestor after their separation from HRV-A. …”
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Identification and evolution analysis of YUCCA genes of Medicago sativa and Medicago truncatula and their expression profiles under abiotic stress by An Shao, Shugao Fan, Xiao Xu, Wei Wang, Jinmin Fu

“…In this study, 12 MsYUCs and 15 MtYUCs containing characteristic conserved motifs were identified in M. sativa (Medicago sativa L.) and M. truncatula (Medicago truncatula Gaertn.), respectively. Phylogenetic analysis revealed that YUC proteins underwent an evolutionary divergence. …”
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Prevalence and Genetic Diversity of Avipoxvirus in House Sparrows in Spain. by Jorge Ruiz-Martínez, Martina Ferraguti, Jordi Figuerola, Josué Martínez-de la Puente, Richard Alexander John Williams, Amparo Herrera-Dueñas, José Ignacio Aguirre, Ramón Soriguer, Clara Escudero, Michaël André Jean Moens, Javier Pérez-Tris, Laura Benítez

“…Molecular analyses of poxvirus-like lesions revealed that 63% of the samples were positive. Molecular and phylogenetic analyses of 29 DNA sequences from the fpv167 gene, detected two strains belonging to the canarypox clade (subclades B1 and B2) previously found in Spain. …”
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The repertoire of olfactory C family G protein-coupled receptors in zebrafish: candidate chemosensory receptors for amino acids by Ngai John, Alioto Tyler S

“…</p> <p>Results</p> <p>Using genome database mining and other informatics approaches, we identified and characterized the repertoire of 54 intact "V2R-like" olfactory C family GPCRs in the zebrafish. Phylogenetic analysis – which also included a set of 34 C family GPCRs from fugu – places the fish olfactory receptors in three major groups, which are related to but clearly distinct from other C family GPCRs, including the calcium sensing receptor, metabotropic glutamate receptors, GABA-B receptor, T1R taste receptors, and the major group of V2R vomeronasal receptor families. …”
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Constraining the body mass range of Anzu wyliei using volumetric and extant-scaling methods by Kyle Atkins-Weltman, Eric Snively, Patrick O'Connor

“…However, volumetric mass estimates are likely more precise because the models are based on comprehensive specimen anatomy rather than regressions of a phylogenetically comprehensive but disparate sample.…”
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Overexpression of kale (Brassica oleracea L. var. acephala) BoMYB increases anthocyanin content in Arabidopsis thaliana by Yushu Wang, Huan Wang, Meiling Gao, Zhenyu Fan, Yang Chen, Yifeng Jin

“…The BoMYB protein was predicted to contain two MYB conserved domains and to be localized in the cell nucleus. A phylogenetic tree indicated that the amino acid sequence encoded by BoMYB in kale was most closely related to the MYB protein sequence of Brassica napus. …”
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Genome-wide identification, characterization and expression analysis of the DUF668 gene family in tomato by Hui Li, Tingrui Zou, Shuisen Chen, Ming Zhong

“…In this study, a total of nine putative SlDUF668 genes were identified in tomato, distributed on six chromosomes. Phylogenetic analyses revealed that SlDUF668 proteins were classified into two major groups. …”
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Use of functional gene arrays for elucidating in situ biodegradation by Joy D. Van Nostrand, Zhili eHe, Jizhong eZhou, Jizhong eZhou, Jizhong eZhou

“…The most comprehensive FGA to date is the GeoChip array, which targets tens of thousands of genes involved in the geochemical cycling of carbon, nitrogen, phosphorus, and sulphur, metal resistance and reduction, energy processing, antibiotic resistance and contaminant degradation as well as phylogenetic information (gyrB). Since the development of GeoChips, many studies have been performed using this FGA and have shown it to be a powerful tool for rapid, sensitive and specific examination of microbial communities in a high-throughput manner. …”
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Genetic Variation of Monilinia fructicola Population in Korea by Su In Lee, Hwa-Jung Lee, Youn-Sig Kwak

“…A comparative analysis of strain characteristics, such as isolation locations, host plants, and responses to chemical fungicides, was conducted. AFLP phylogenetic classification using 20 primer pairs revealed the presence of three distinct groups, with strains from Jeolla province consistently forming a separate group at a high frequency. …”
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Automatic identification and annotation of MYB gene family members in plants by Boas Pucker

“…MYB candidates are identified, screened for the presence of a MYB domain and other motifs, and finally placed in a phylogenetic context with well characterized sequences. …”
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