Suprageneric phylogenetics of Myrteae, the generically richest tribe in Myrtaceae (Myrtales) by Lucas, E, Harris, S, Mazine, F, Bellsham, SR, Lughadha, E, Telford, A, Gasson, P, Chase, M

“…To clarify relationships within the predominantly Neotropical and exclusively fleshy-fruited Myrteae (49 genera and c. 2,500 species), we provide a phylogenetic hypothesis for evolutionary relationships between 31 of these genera by analyzing nuclear ITS and ETS ribosomal DNA, and plastid psbA-trnH and matK DNA sequences from 75 Myrteae species and 13 outgroup taxa using parsimony and Bayesian inference. …”

Molecular evolution and targeted recombination of SARS-CoV-2 in South Korea by Atanas V. Demirev, Kyuyoung Lee, Joon-Yong Bae, Heedo Park, Sejik Park, Hyunbeen Kim, Jungmin Lee, Junhyung Cho, Jeong-Sun Yang, Kyung-Chang Kim, Joo-Yeon Lee, Kisoon Kim, Philippe Lemey, Man-Seong Park, Jin Il Kim

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Phylogenetic networks : concepts, algorithms and applications / by Huson, Daniel H., Rupp, Regula, Scornavacca, Celine

“…This book provides the first interdisciplinary overview of phylogenetic networks. Beginning with a concise introduction to both phylogenetic trees and phylogenetic networks, the fundamental concepts and results are then presented for both rooted and unrooted phylogenetic networks. …”

Revising transcriptome assemblies with phylogenetic information. by August Guang, Mark Howison, Felipe Zapata, Charles Lawrence, Casey W Dunn

“…This error is difficult to identify during assembly, but in a phylogenetic analysis such errors can be diagnosed from gene phylogenies where they appear as clades of tips from the same species with improbably short branch lengths. treeinform is a method that uses phylogenetic information across species to refine transcriptome assemblies within species. …”
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Phylogenetic analysis of CPV isolate of Manipur by RAJKUMARI SANJUKTA, MAHESH KUMAR, RAJKUMARI MANDAKINI, JOKEN BAM, I KARUNA, NAGAPPA K, S P SINGH

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Fast Structural Search in Phylogenetic Databases by William H. Piel, Dennis Shasha, Huiyuan Shan, Jason T. L. Wang

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Editorial: The Phylogenetic History of Hypothalamic Neuromodulators by Jackson C. Bittencourt, Giovanne B. Diniz, David A. Lovejoy, Herbert Herzog

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Phylogenetic and biogeographic analysis of sphaerexochine trilobites. by Curtis R Congreve, Bruce S Lieberman

“…METHODOLOGY/PRINCIPAL FINDINGS: Cladistic parsimony analysis of cheirurid trilobites assigned to the subfamily Sphaerexochinae was conducted to evaluate phylogenetic patterns and produce a hypothesis of relationship for the group. …”
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Functional and phylogenetic structures of pheasants in China by Hongyan Yao, Pengcheng Wang, Nan Wang, Philip J.K. McGowan, Xingfeng Si, Jianqiang Li, Jiliang Xu

“…Patterns of functional and phylogenetic structures and richness-controlled functional and phylogenetic diversity differed between regions, suggesting that phylogenetic structures are not a good proxy for identifying functional structures. …”
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Phylogenetic analysis of Harmonin homology domains by Baptiste Colcombet-Cazenave, Karen Druart, Crystel Bonnet, Christine Petit, Olivier Spérandio, Julien Guglielmini, Nicolas Wolff

“…Every hit was manually annotated, using a clustering approach, confirming that only a few proteins contain HHDs. We report the phylogenetic coverage of each protein and build a phylogenetic tree to trace the evolution of HHDs. …”
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Phylogenetic Study of the Evolution of PEP-Carboxykinase by Sanjukta Aich, Louis T.J. Delbaere

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Phylogenetic divergence of cell biological features by Michael Lynch

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Phylogenetic insights into Andean plant diversification by Federico eLuebert, Maximilian eWeigend

“…We compare available phylogenetic studies and<br/>divergence time estimates for plant lineages that may have diversified in response to Andean<br/>orogeny. …”
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Phylogenetic analysis of the endoribonuclease Dicer family. by Zeqian Gao, Miao Wang, David Blair, Yadong Zheng, Yongxi Dou

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Phylogenetic Relationship Among Brackishwater Species by J Ashok Kumar, K Vinaya Kumar, S Avunje, V Akhil, S Ashok, Sujeet Kumar, B Sivamani, Monendra Grover, Anil Rai, SV Alavandi, KK Vijayan

“…In addition, genome-based similarity indices like average nucleotide identity (ANI) and in silico DNA-DNA hybridization (DDH) were computed as confirmatory tests to verify the phylogenetic relations. There were some misclassifications occurred regarding phylogenetic relations based on 16s rRNA genes and MLST genes, while phylogeny with single-copy orthologous genes produced accurate species-level clustering. …”
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Vestige: Maximum likelihood phylogenetic footprinting by Maxwell Peter, Wakefield Matthew J, Huttley Gavin A

“…<p>Abstract</p> <p>Background</p> <p>Phylogenetic footprinting is the identification of functional regions of DNA by their evolutionary conservation. …”
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Apoptosis in Trypanosomatids: Evolutionary and phylogenetic considerations by Marcello A. Barcinski

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Phylogenetic Lineages of Francisella tularensis in Animals by Paola Pilo

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Phylogenetic analysis of fungal ABC transporters by Driessen Arnold JM, Kovalchuk Andriy

“…</p> <p>Results</p> <p>We performed a phylogenetic analysis of the ABC proteins extracted from the genomes of 27 fungal species from 18 orders representing 5 fungal phyla thereby covering the most important groups. …”
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Rearrangement moves on rooted phylogenetic networks. by Philippe Gambette, Leo van Iersel, Mark Jones, Manuel Lafond, Fabio Pardi, Celine Scornavacca

“…Phylogenetic tree reconstruction is usually done by local search heuristics that explore the space of the possible tree topologies via simple rearrangements of their structure. …”
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