Microbial Signature in Adipose Tissue of Crohn’s Disease Patients by Carolina Serena, Maribel Queipo-Ortuño, Monica Millan, Lidia Sanchez-Alcoholado, Aleidis Caro, Beatriz Espina, Margarita Menacho, Michelle Bautista, Diandra Monfort-Ferré, Margarida Terrón-Puig, Catalina Núñez-Roa, Elsa Maymó-Masip, M. Mar Rodriguez, Francisco J. Tinahones, Eloy Espin, Marc Martí, Sonia Fernández-Veledo, Joan Vendrell

“…Proteobacteria was the most abundant phylum in both CF and mesenteric AT, and positively correlated with fecal calprotectin/C-reactive protein. …”
Get full text

Variation of Helicoverpa armigera symbionts across developmental stages and geographic locations by Chenchen Zhao, Chenchen Zhao, Li Wang, Li Wang, Kaixin Zhang, Kaixin Zhang, Kaixin Zhang, Xiangzhen Zhu, Xiangzhen Zhu, Xiangzhen Zhu, Dongyang Li, Dongyang Li, Dongyang Li, Jichao Ji, Jichao Ji, Jichao Ji, Junyu Luo, Junyu Luo, Jinjie Cui, Jinjie Cui

“…In the whole life cycle of H. armigera, Proteobacteria, Firmicutes, Bacteroidetes, and Actinobacteria were the dominant bacteria at the phylum level, while Enterococcus, Enterobacter, Glutamicibacter, and Bacillus were the four dominant bacteria at the genus level. …”
Get full text

Preliminary Data on <i>Escherichia coli</i>, <i>Yersinia enterocolitica</i>, and Other Bacteria, as Well as Absent African Swine Fever Virus in the Gut Microbiota of Wild Mice and... by Yana Ilieva, Maya Margaritova Zaharieva, Lyudmila Dimitrova, Mila D. Kaleva, Joanna Jordanova, Maya Dimitrova, Michaela Beltcheva, Iliana Aleksieva, Yordan Georgiev, Yordan Manasiev, Hristo Najdenski

“…We did not find any members of the other major phylum, Bacteroidetes, likely due to lack of metagenomic techniques. …”
Get full text

Bacterial Community Drives the Carbon Source Degradation during the Composting of <i>Cinnamomum camphora</i> Leaf Industrial Extracted Residues by Hanchang Zhou, Lan Di, Xiaoju Hua, Tao Deng, Xiaodong Wang

“…The relative abundance of the main bacterial phylum <i>Firmicute</i> decreased from 85.1% to 40.3% while <i>Actinobactreia</i> increased from 14.4% to 36.7%, and the relative abundance of main fungal class <i>Eurotiomycetes</i> decreased from 60.9% to 19.6% while <i>Sordariomycetes</i> increased from 16.9% to 69.7%. …”
Get full text

Causal relationship of genetically predicted gut microbiota with thyroid cancer: a bidirectional two-sample mendelian randomization study by Xiaohe Sun, Xiaohe Sun, Shuai Chen, Shuoqi Zhao, Shuoqi Zhao, Jingwen Wang, Jingwen Wang, Haibo Cheng, Haibo Cheng

“…Among them, we observed a positive causal effect of Family Christensenellaceae (OR = 1.664, 95% CI: 1.103–2.511, P = 0.015), Family Victivallaceae (OR = 1.268, 95% CI: 1.009–1.594, P = 0.042), Genus Methanobrevibacter (OR = 1.505, 95% CI: 1.049–2.159, P = 0.027), Genus Ruminococcus2 (OR = 1.846, 95% CI: 1.261–2.704, P = 0.002), Genus Subdoligranulum (OR = 1.907, 95% CI: 1.165–3.121, P = 0.010), Phylum Verrucomicrobia (OR = 1.309, 95% CI: 1.027–1.668, P = 0.029) on TC risk, while Class Betaproteobacteria (OR = 0.522, 95% CI: 0.310–0.879, P = 0.015), Family Family XI (OR = 0.753, 95% CI: 0.577–0.983, P = 0.037), Genus Sutterella (OR = 0.596, 95% CI: 0.381–0.933, P = 0.024) might be correlated with a decreased risk of TC. …”
Get full text

The Potential Use of Endophyte-Free <i>inebrians</i> as Sheep Feed Evaluated with In Vitro Fermentation by Yaling Ma, Hucheng Wang, Chunjie Li, Kamran Malik

“…The results revealed that EF100 had the highest values for pH, acetate: propionate, the Patescibacteria, Kiritimatiellaeota, and Synergistetes phylum levels, <i>Ruminococcaceae</i>, <i>Prevotellaceae</i>, and <i>Saccharofermentans</i> genus levels than the other treatments (<i>p</i> < 0.05). …”
Get full text

Remodeling of the microbiota improves the environmental adaptability and disease resistance in Tibetan pigs by Zhenyu Chang, Zhenyu Chang, Zhenyu Chang, Suxue Bo, Suxue Bo, Qingqing Xiao, Qingqing Xiao, Yu Wang, Yu Wang, Xi Wu, Xi Wu, Yuxuan He, Yuxuan He, Mujahid Iqbal, Yourong Ye, Yourong Ye, Peng Shang, Peng Shang

“…Understanding the structure and function of the intestinal microbiota at different growth stages of Tibetan pigs can provide a theoretical basis for guiding nutritional regulation and feeding management in different stages.MethodsFecal samples were collected from the Tibetan piglets at different growth stages, and the 16S rRNA was sequenced to analyze the changes of intestinal microbiota.ResultsAlpha and Beta diversity indexes showed that the diversity of the intestinal microbiota did not change during the three growth stages, and the main components of intestinal microbiota were not significantly different. At the phylum level, Firmicutes and Bacteroidetes were dominant and abundant at different growth stages and were not restricted by age. …”
Get full text

Transcriptional variation in Babesia gibsoni (Wuhan isolate) between in vivo and in vitro cultures in blood stage by Zhen Han, Yaxin Zheng, Yu Shi, Fangwei Chen, Chenglong Wu, Lingna Wang, Shiyu Lu, Dongfang Li, Xingai Guan, Lan He, Junlong Zhao

“…Abstract Background Babesia gibsoni, the causative agent of canine babesiosis, belongs to the phylum Apicomplexa. The development of in vitro culture technology has driven research progress in various kinds of omics studies, including transcriptomic analysis of Plasmodium spp. between in vitro and in vivo environments, which has prompted the observation of diagnostic antigens and vaccine development. …”
Get full text

Effects of Flammulina velutipes mushroom residues on growth performance, apparent digestibility, serum biochemical indicators, rumen fermentation and microbial of Guizhou black goa... by Yong Long, Yong Long, Yong Long, Yong Long, Wen Xiao, Wen Xiao, Yanpin Zhao, Yanpin Zhao, Chao Yuan, Defeng Wang, Yang Yang, Chaozhi Su, Pramote Paengkoum, Yong Han, Yong Han

“…The levels of growth hormone (GH), immunoglobulin A (IgA), and immunoglobulin M (IgM) in group II were higher than that of group I (p &lt; 0.01), which the level of glutamic oxalacetic transaminase (ALT) and interleukin-6 (IL-6) was noticeably lower than that of group I (p &lt; 0.01). 30% FVMR in FTMR diets had no effect on rumen fermentation parameters and microbial composition at the phylum level of Guizhou black male goats (p &gt; 0.05). …”
Get full text

Effects of Organic Matter Addition on Soil Carbon Contents, CO₂ Emissions, and Bacterial Compositions in a Paddy Field in South China by Xiangbin Yao, Xuechan Zhang, Meiyang Duan, Ya Yang, Qihuan Xie, Haowen Luo, Jiemei Peng, Zhaowen Mo, Shenggang Pan, Xiangru Tang

“…The top three most important soil bacterial phylum influenced by NPK+OM were <i>LCP-89</i>, <i>BRC1</i>, and <i>Rokubacteria</i> in April, as well as <i>Firmicutes</i>, <i>Nitrospinae</i>, and <i>BRC1</i> in July. …”
Get full text

Effects of Isochlorogenic Acid on Ewes Rumen Fermentation, Microbial Diversity and Ewes Immunity of Different Physiological Stages by Shuyan Li, Xiongxiong Li, Yuzhu Sha, Shuai Qi, Xia Zhang, Huning Wang, Zhengwen Wang, Shengguo Zhao, Ting Jiao

“…Principal component analysis (PCA) showed that there were significant differences in rumen microorganism structure between CON and ICGA at all physiological stages (<i>p</i> < 0.01). At the phylum level, compared with the CON, <i>Firmicutes</i> relative abundance of three physiological stages decreased (<i>p</i> > 0.05) while <i>Bacteroidota</i> increased (<i>p</i> > 0.05). …”
Get full text

Gut microbiome predictors of Escherichia coli sequence type 131 colonization and lossResearch in context by Daniel E. Park, Maliha Aziz, Benjamin J. Koch, Kelsey Roach, Connie Clabots, James R. Johnson, Lance B. Price, Cindy M. Liu

“…At the baseline timepoint, H30R-positive participants had higher proportional abundances of Actinobacteria phylum (mean: 4.9% vs. 3.1%) than ST131-negative participants. …”
Get full text

Bacterial and Fungal Adaptations in Cecum and Distal Colon of Piglets Fed With Dairy-Based Milk Formula in Comparison With Human Milk by Ahmed Elolimy, Ahmed Elolimy, Fernanda Rosa, Fernanda Rosa, Fernanda Rosa, Patricia Tripp, Mohamed Zeineldin, Anne K. Bowlin, Anne K. Bowlin, Christopher Randolph, Michael S. Robeson, Laxmi Yeruva, Laxmi Yeruva

“…In the large intestine at PND 21 and PND 51, Proteobacteria phylum was significantly higher in MF-fed group, and species Burkholderiales bacterium of phyla was significantly higher in MF group relative to HM group. …”
Get full text

Acute gastrointestinal injury and altered gut microbiota are related to sepsis-induced cholestasis in patients with intra-abdominal infection: a retrospective and prospective obser... by Beiyuan Zhang, Xiancheng Chen, Chenhang He, Ting Su, Ke Cao, Xiaoyao Li, Jianfeng Duan, Ming Chen, Zhanghua Zhu, Wenkui Yu

“…Patients with SIC had a more severe gut microbiota disorder on day 7 than those without SALD, including lower microbiota diversities, decreased abundance of Firmicutes and Bacteroidetes, and increased abundance of Proteobacteria and Actinobacteria at the phylum level. Furthermore, Burkholderia − Caballeronia − Paraburkholderia and Delftia, the two most abundant genera, were significantly higher in the SIC group than in the non-SALD group. …”
Get full text

Effects of Agro-Industrial Byproduct-Based Diets on the Growth Performance, Digestibility, Nutritional and Microbiota Composition of Mealworm (<em>Tenebrio molitor</em> L.) by Ana Montalbán, Cristian Jesús Sánchez, Fuensanta Hernández, Achille Schiavone, Josefa Madrid, Silvia Martínez-Miró

“…The representation of Tenericutes phylum was higher (<i>p</i> < 0.05) in the mealworms reared on MS-MP and HS-LP diets, whereas Proteobacteria and Cyanobacteria were higher in abundance (<i>p</i> < 0.001) in the insects reared on LS-HP. …”
Get full text

Effect of Artificial Liver Support Systems on Gut Microbiota in Patients with HBV-Related Acute-on-Chronic Liver Failure by Zhiying Song, Qiong Xie, Yao Zhou, Shufen Song, Zhen Gao, Yu Lan, Zhiguo Wu, Hongxin Cai, Dongshan Yu, Cuiyun Liu, Junrong Liang, Baogang Xie, Shuilin Sun

“…The overall proportion of HBV-ACLF patients with coinfection was 27.59%; the coinfection can reduce the abundance of the <i>Bacteroidetes</i> phylum in the microbiome significantly whereas <i>Proteobacteria</i> were highly enriched. …”
Get full text

An in-depth investigation of the microbiota and its virulence factors associated with severe udder cleft dermatitis lesions by A.S. Vermeersch, M. Ali, Y. Gansemans, F. Van Nieuwerburgh, R. Ducatelle, P. Geldhof, D. Deforce, J. Callens, G. Opsomer

“…In UCD samples, Bacteroidota was the most abundant phylum. At genus level, Bifidobacterium spp. had the highest relative abundance in healthy skin samples, whereas Porphyromonas spp. and Corynebacterium spp. had the highest relative abundance in UCD samples. …”
Get full text

From adenoma to CRC stages: the oral-gut microbiome axis as a source of potential microbial and metabolic biomarkers of malignancy by Edda Russo, Leandro Di Gloria, Giulia Nannini, Gaia Meoni, Elena Niccolai, Maria Novella Ringressi, Simone Baldi, Renato Fani, Leonardo Tenori, Antonio Taddei, Matteo Ramazzotti, Amedeo Amedei

“…Finally, minor bacterial differences in CRC patients at stage T2 (TNM classification) have been detected, with a raise of the Spirochaetota phylum in CRC samples, with a slight increase of the Alphaproteobacteria class in fecal samples. …”
Get full text

16S rRNA–Based Analysis Reveals Differences in the Bacterial Community Present in Tissues of <i>Choromytilus chorus</i> (Mytilidae, Bivalvia) Grown in an Estuary and a Bay in South... by Tamara Valenzuela, Joaquin I. Rilling, Giovanni Larama, Jacquelinne J. Acuña, Marco Campos, Nitza G. Inostroza, Macarena Araya, Katherine Altamirano, So Fujiyoshi, Kyoko Yarimizu, Fumito Maruyama, Milko A. Jorquera

“…In the Nehuentue estuary, the bacterial communities in the tissues were dominated by the Tenericutes phylum, whereas the Tenericutes and Proteobacteria phyla dominated in mussels from Hueihue Bay. …”
Get full text

Low-Molecular-Weight Seaweed-Derived Polysaccharides Lead to Increased Faecal Bulk but Do Not Alter Human Gut Health Markers by Ciara D. Bannon, Julia Eckenberger, William John Snelling, Chloe Elizabeth Huseyin, Philip Allsopp, Conall Strain, Priya Ramnani, Roberto Chitarrari, John Grant, Sarah Hotchkiss, Kevin Philp, Ross Campbell, Kieran Michael Tuohy, Marcus J. Claesson, Nigel George Ternan, James S. G. Dooley, Roy D. Sleator, Ian Rowland, Chris I. R. Gill

“…Analysis of gut microbiome composition by sequencing indicated no significant changes attributable to treatment at the phylum and family level, although FISH analysis showed an increase in <i>Faecalibacterium prausnitzii</i> in subjects consuming agar LMWP. …”
Get full text