<i>Rhodoalgimonas zhirmunskyi</i> gen. nov., sp. nov., a Marine Alphaproteobacterium Isolated from the Pacific Red Alga <i>Ahnfeltia tobuchiensis</i>: Phenotypic Characterization a... by Olga Nedashkovskaya, Nadezhda Otstavnykh, Larissa Balabanova, Evgenia Bystritskaya, Song-Gun Kim, Natalia Zhukova, Liudmila Tekutyeva, Marina Isaeva

“…A phylogenetic analysis based on 16S rRNA gene sequences placed the novel strain within the family <i>Roseobacteraceae</i>, class <i>Alphaproteobacteria</i>, phylum <i>Pseudomonadota</i>, where the nearest neighbor was <i>Shimia sediminis</i> ZQ172^T (97.33% of identity). …”
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Discovery and functional characterization of neuropeptides in crinoid echinoderms by Alessandra Aleotti, Alessandra Aleotti, Iain C. Wilkie, Luis A. Yañez-Guerra, Giacomo Gattoni, Giacomo Gattoni, Tahshin A. Rahman, Richard F. Wademan, Zakaryya Ahmad, Deyana A. Ivanova, Dean C. Semmens, Jérôme Delroisse, Weigang Cai, Esther Odekunle, Michaela Egertová, Cinzia Ferrario, Michela Sugni, Francesco Bonasoro, Maurice R. Elphick

“…Of particular interest are deuterostome invertebrates such as the phylum Echinodermata, which occupies a phylogenetic position that has facilitated reconstruction of the evolution of neuropeptide signaling systems in Bilateria. …”
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The effects of a low carbohydrate diet combined with partial meal replacement on obese individuals by Yulian Zhong, Ximin Chen, Chao Huang, Yuexiao Chen, Fengyi Zhao, Runhua Hao, Niannian Wang, Wang Liao, Hui Xia, Ligang Yang, Shaokang Wang, Guiju Sun

“…Among the first 10 species of Phylum, only the control group and the intervention group 2 had significantly higher Patescibacteria than the intervention group 1. …”
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Assembly and Analysis of <i>Haemonchus contortus</i> Transcriptome as a Tool for the Knowledge of Ivermectin Resistance Mechanisms by David Emanuel Reyes-Guerrero, Verónica Jiménez-Jacinto, Rogelio Alejandro Alonso-Morales, Miguel Ángel Alonso-Díaz, Jocelyn Maza-Lopez, René Camas-Pereyra, Agustín Olmedo-Juárez, Rosa Isabel Higuera-Piedrahita, María Eugenia López-Arellano

“…Overall, ~127 Mbp were assembled and distributed into 77,422 transcript sequences, and 4394 transcripts of the de novo transcriptome were matched base on at least one of the following criteria: (1) Phylum Nemathelminthes and Platyhelminthes, important for animal health care, and (2) ≥55% of sequence identity with other organisms. …”
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Variations of rhizosphere and bulk soil microbial community in successive planting of Chinese fir (Cunninghamia lanceolata) by Jiachen Chen, Jiachen Chen, Jiachen Chen, Zhifang Deng, Zheng Jiang, Jin Sun, Fangfang Meng, Fangfang Meng, Fangfang Meng, Xiaodong Zuo, Xiaodong Zuo, Xiaodong Zuo, Linkun Wu, Guangqiu Cao, Guangqiu Cao, Guangqiu Cao, Shijiang Cao, Shijiang Cao, Shijiang Cao

“…Our findings revealed that the diversity and richness of bacterial and fungal communities were remarkably reduced in TCP than FCP and SCP, and were remarkably different between FCP and SCP. At the phylum level, the fungi with greatest relative abundance were Basidiomycota (5.74–32.88%) and Ascomycota (57.63–87.38%), while the bacteria with the greatest relative abundance were Acidobacteria (23.16–31.17%) and Proteobacteria (24.71–29.32%) for all treatments in both soil types. …”
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Effects of Anemoside B4 on Diarrhea Incidence, Serum Indices, and Fecal Microbial of Suckling Calves by Meng Lu, Meng Lu, Fengming Hu, Fengming Hu, Yanliang Bi, Yanliang Bi, Tao Ma, Tao Ma, Qiyu Diao, Qiyu Diao, Linshu Jiang, Yan Tu, Yan Tu

“…Compared with Group CON, 45 mg / day Anemoside B4 supplementation significantly increased the contents of Bacteroidota (at the phylum level), Prevotella (at the genus level) at 28-day-old (p &lt; 0.05), and the content of Sutterella (at the genus level) at 56-day-old (p &lt; 0.05), promoted the processes of energy metabolism, glycan biosynthesis and metabolism, metabolism of cofactors and vitamins (p &lt; 0.05). …”
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Microbiota analysis in the hemodialysis population - Focusing on Enterobacteriaceae by Hon-Yen Wu, Yi-Tsung Lin, Wan-Chuan Tsai, Yen-Ling Chiu, Mei-Ju Ko, Ju-Yeh Yang, Mei-Fen Pai, Hsin-Sui Hsu, Shih-Ping Hsu, Yu-Sen Peng, Chun-Hsing Liao

“…No significant differences were found in alpha diversity between HD and control groups (HD group 949.5, controls 898; p = 0.16) although significant between-group differences were found in beta diversity (p < 0.001). At phylum level, HD group had a higher abundance of Firmicutes and Proteobacteria, but lower abundance of Bacteriodetes. …”
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Investigating of the microbial communities in a red circle disease of sea cucumber based on metagenomic sequencing by Zhen Zhang, Yan Liu, Ziyan Wang, Zhonghua Wang, Jun Zhou, Jiaojiao Han, Chenyang Lu, Ye Li, Tinghong Ming, Xiurong Su

“…Proteobacteria was the most abundant phylum (42.88%), followed by Bacteroidetes (3.30%), Viruses_noname (3.12%), Verrucomicrobia (2.99%), Planctomycetes (2.67%), and Viruses_unclassified (1.99%). …”
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The causality between gut microbiome and chronic regional pain: a Mendelian randomization analysis by Qing-Ao Xiao, Qing-Ao Xiao, Lei Qin, Lei Qin, Jing Yu, Jing Yu, Yin-Tao Hu, Yin-Tao Hu, Lin-Feng Ai, Lin-Feng Ai, De-Cheng Wang, De-Cheng Wang, De-Cheng Wang, Xuan Xia, Xuan Xia, Xuan Xia, Xiao-Lin Zhang, Xiao-Lin Zhang

“…In order to ensure the accuracy of the results, multiple sensitivity analyses were employed.ResultsThis study uncovered significant causal associations between six gut microbial taxa and three types of CRP (forward: Genus Parabacteroides for general pain; Class Bacteroidia, Order Bacteroidales, and Phylum Bacteroidetes for back pain. Reverse: knee pain for Genus Howardella and Order Coriobacteriales) by forward and reverse MR analysis. …”
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Treatment with 2 commercial antibiotics reduced clinical and systemic signs of pneumonia and the abundance of pathogenic bacteria in the upper respiratory tract of preweaning dairy... by A.C.C.H. Tomazi, T. Tomazi, L. Bringhenti, A.P.A. Vinhal, M.X. Rodrigues, T.R. Bilby, H.J. Huson, R.C. Bicalho

“…Next-generation sequencing of the 16S rRNA gene was used to assess the URT microbiota at the phylum and genus levels. Clinical signs associated with pneumonia and otitis media were assessed daily, as was the need for antibiotic interventions. …”
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Bovine milk with variant β-casein types on immunological mediated intestinal changes and gut health of mice by Bin Liu, Bin Liu, Weicang Qiao, Weicang Qiao, Minghui Zhang, Minghui Zhang, Yanpin Liu, Yanpin Liu, Junying Zhao, Junying Zhao, Lijun Chen, Lijun Chen

“…Results showed that consumption of A2-type β-casein milk could improve proximal small intestine villus and crypt morphology (p &lt; 0.05), increase IgG and IgE responses, and modulate the composition and diversity of gut microbiota by increase the relative abundance of phylum Proteobacteria, class Clostridia, family Ruminococcaceae and species Lactobacillus animalis (p &lt; 0.05). …”
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The potential of a combination of pungent spices as a novel supplement in gilthead seabream (Sparus aurata) diets to aid in the strategic use of fish oil in aquafeeds: a holistic p... by Alberto Ruiz, Alberto Ruiz, Ignasi Sanahuja, Karl B. Andree, Dolors Furones, Paul G. Holhorea, Josep A. Calduch-Giner, Jose J. Pastor, Marc Viñas, Jaume Pérez-Sánchez, Sofia Morais, Enric Gisbert

“…No differences in microbial diversity were found, except for an increase in Simpson’s Index in the posterior intestine of fish fed the SPICY0.1% diet, reflected in the increased relative abundance of the phylum Chloroflexi and lower relative abundances of the genera Campylobacter, Corynebacterium, and Peptoniphilus. …”
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Sputum microbiota and inflammatory subtypes in asthma, COPD, and its overlap by Chie Morimoto, MD, PhD, Hisako Matsumoto, MD, PhD, Natsuko Nomura, MD, PhD, Hironobu Sunadome, MD, PhD, Tadao Nagasaki, MD, PhD, Susumu Sato, MD, PhD, Atsuyasu Sato, MD, PhD, Tsuyoshi Oguma, MD, PhD, Isao Ito, MD, PhD, Mariko Kogo, MD, PhD, Keisuke Tomii, MD, PhD, Tomoko Tajiri, MD, PhD, Kai Ohashi, MSc, Takamitsu Tsukahara, PhD, Toyohiro Hirai, MD, PhD

“…The relative abundances of phylum Bacteroidetes, class Bacteroidia, and genus Porphyromonas were associated with decreased eosinophilic inflammation, and were significantly lower in ACO than in COPD. …”
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Division of developmental phases of freshwater leech Whitmania pigra and key genes related to neurogenesis revealed by whole genome and transcriptome analysis by Jiali Liu, Jinxin Liu, Mingyue Li, Lisi Zhou, Weijun Kong, Hailin Zhang, Panpan Jin, Fuhua Lu, Gufa Lin, Linchun Shi

“…Abstract The freshwater leech Whitmania pigra (W. pigra) Whitman (Annelida phylum) is a model organism for neurodevelopmental studies. …”
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Organic carbon release, denitrification performance and microbial community of solid-phase denitrification reactors using the blends of agricultural wastes and artificial polymers... by Hongwu Cui, Yuna Feng, Zhendong Yin, Keming Qu, Lu Wang, Jiaxin Li, Tongtong Jin, Ying Bai, Zhengguo Cui

“…The NRE results were supported by the abundance of the Proteobacteria microbial community at the phylum level and Marinobacter at the genus level. …”
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Promise and limitations of 18S genetic screening of extracted fecal DNA from wild capuchins by Swellan Luciann Pinto, Swellan Luciann Pinto, Megan Carvalho Henriquez, Megan Carvalho Henriquez, Megan Carvalho Henriquez, Megan Carvalho Henriquez, Saul Cheves Hernandez, Gwen Duytschaever, Janneke Wit, Janneke Wit, Russell William Avramenko, Russell William Avramenko, John Stuart Gilleard, John Stuart Gilleard, Joseph Daniel Orkin, Joseph Daniel Orkin, Amanda Dawn Melin, Amanda Dawn Melin, Amanda Dawn Melin, Amanda Dawn Melin

“…Of these, 66 were assigned to the phylum Nematoda. 64 ASVs are from taxa that possibly parasitize monkeys or their food items: 33 were assigned to lungworms (Superfamily Metastrongyloidae; genus Angiostrongylus), two to the genus Strongyloides, and one to the genus Austrostrongylus. …”
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Evaluation of Gut Microbiota in Healthy Persons and Type 1 Diabetes Mellitus Patients in North-Western Russia by Alexei B. Chukhlovin, Vasilisa V. Dudurich, Aleksey V. Kusakin, Dmitry E. Polev, Ekaterina D. Ermachenko, Mikhail V. Aseev, Yuri A. Zakharov, Yuri A. Eismont, Lavrentii G. Danilov, Oleg S. Glotov

“…Despite the broad scatter, the biological diversity for bacterial microbiota expressed as the Shannon index was significantly increased from younger to older ages in the comparison group, higher in adult healthy persons, with a trend for decrease in the <i>Actinomycetota</i> phylum which includes <i>Bifidobacterium longum</i> species. …”
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Unveiling the Wheat Microbiome under Varied Agricultural Field Conditions by Sarika Jaiswal, Bharti Aneja, Jaisri Jagannadham, Bharati Pandey, Rajender Singh Chhokar, Subhash Chander Gill, Om Parkash Ahlawat, Anuj Kumar, U. B. Angadi, Anil Rai, Ratan Tiwari, Mir Asif Iquebal, Dinesh Kumar

“…After the data preprocessing, microbial community analysis was performed, followed by functional analysis and annotation. An abundance of the phylum Proteobacteria was observed, followed by Acidobacteria, Actinobacteria, and Gemmatimonadetes in the majority of the samples, while relative abundance was found to vary at the genus level. …”
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Characteristic intestinal flora and associated biomarkers in esophageal cancer based on PacBio SMRT sequencing by Ping WAN, Weitao SHEN, Zhenyan PENG, Ran LIU

“…ResultsBased on sequencing samples, the results of α diversity analysis showed that the Ace, Chao1, Simpson Diversity, and Shannon Wiener indices of the esophageal cancer group were higher than those of the healthy control group (P<0.05), and the results of β diversity showed that the scattered clusters of the esophageal cancer group and the healthy control group were separated, which meant that there were differences in the structure of intestinal flora between the two groups. It was found at the phylum level that the abundances of Proteobacteria, Bacteroidetes, and Firmicutes in the intestinal flora of the esophageal cancer group were increased. …”
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The shift of soil microbial community induced by cropping sequence affect soil properties and crop yield by Lei Sun, Lei Sun, Shuang Wang, Manik Prabhu Narsing Rao, Yu Shi, Zheng-Han Lian, Pin-Jiao Jin, Wei Wang, Yu-Mei Li, Kang-Kang Wang, Aparna Banerjee, Xiao-Yang Cui, Dan Wei

“…Network-based analysis suggests that bacterial phyla Acidobacteria and Actinobacteria while fungal phylum Ascomycota showed a positive correlation with other microbial communities. …”
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