Effects of multi-resistant ScALDH21 transgenic cotton on soil microbial communities by Qilin Yang, Qilin Yang, Qilin Yang, Jiancheng Wang, Jiancheng Wang, Jiancheng Wang, Dawei Zhang, Hui Feng, Hui Feng, Tohir A. Bozorov, Tohir A. Bozorov, Honglan Yang, Honglan Yang, Honglan Yang, Daoyuan Zhang, Daoyuan Zhang, Daoyuan Zhang

“…Dominant clades of fungal and bacterial genera were equivalent at the phylum and genus levels in all three groups. The correlation analysis of microbial communities and soil environmental factors revealed the absence of significant differences between transgenic and non-transgenic cotton genotypes. …”
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Seasonal dynamics survey and association analysis of microbiota communities, antibiotic resistance genes distribution, and biotoxicities characterization in landfill-leachate by Lijuan Liu, Lu Shi, Pu Li, Xinxin Ma, Xinyao Hou, Sijin Jiang, Jia Lv, Hongmei Xu, Yue Cheng, Bei Han

“…Result: The biotoxicity of leachate in the second quarter was the highest. The dominant phylum of leachate microbiota from 1st quarters to 4th quarters was Proteobacteria (94.97 %, 85.43 %, 88.20 %, and 84.11 %), and the dominant genera were Thiomonas (60.41 %, 26.83 %, 25.66 %, and 30.51 %), Pseudomonas (5.89 %, 1.86 %, 0.68 %, and 4.72 %), Desulfurella (8.52 %, 0.57 %, 3.81 %, and 8.25 %), and Acidithiobacillus (4.71 %, 0.69 %, 0.87 %, and 5.91 %); Nitrospirillum was negatively correlated with chemical oxygen demand (COD) (R=−0.561, P = 0.008) and five-day biochemical oxygen demand (BOD5) (R=−0.591, P = 0.005); Limnohabitans was positively correlated with pH (R=0.444, P = 0.044). …”
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The accumulation of active ingredients of Polygonatum cyrtonema Hua is associated with soil characteristics and bacterial community by Qingyou Zhang, Qingyou Zhang, Yunzhang Cai, Yunzhang Cai, Luping Zhang, Luping Zhang, Mei Lu, Mei Lu, Luyun Yang, Luyun Yang, Dekai Wang, Qiaojun Jia, Qiaojun Jia

“…High-throughput sequencing demonstrated that Proteobacteria was the dominant bacterial phylum in all samples, and Burkholderia-Caballeronia-Paraburkholderia was the main endophytic bacterial genus in rhizome. …”
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Effect of the ratio of dietary metabolizable energy to nitrogen content on production performance, serum metabolites, rumen fermentation parameters, and bacterial diversity in yaks by Xiaojing Liu, Jie Li, Jie Li, Lizhuang Hao, Allan Degen, Dongyang Wang, Yonggui Ma, Jianzhang Niu, Yanfen Cheng, Yanfen Cheng, Shujie Liu

“…In ruminal bacteria at the phylum level, the relative abundance of Firmicutes (F) was greater and of Bacteroidetes (B) was lesser, while the F:B ratio was greater in group MY than in groups HY an LY. …”
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Effect of Ornithine α-Ketoglutarate on Intestinal Microbiota and Serum Inflammatory Cytokines in Dextran Sulfate Sodium Induced Colitis by Tao Wang, Junquan Tian, Wenxuan Su, Fan Yang, Jie Yin, Qian Jiang, Yuying Li, Kang Yao, Tiejun Li, Yulong Yin

“…Moreover, OKG enhanced the abundance of Firmicutes and decreased that of Bacteriodetes at the phylum level and particularly enhanced the abundance of Alistipes and reduced that of Parabacterioides at the genus level. …”
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Whole genome analysis of host-associated lactobacillus salivarius and the effects on hepatic antioxidant enzymes and gut microorganisms of Sinocyclocheilus grahami by Wei-Gang Xin, Wei-Gang Xin, Xin-Dong Li, Xin-Dong Li, Yi-Cen Lin, Yi-Cen Lin, Yu-Hang Jiang, Yu-Hang Jiang, Mei-Yu Xu, Mei-Yu Xu, Qi-Lin Zhang, Qi-Lin Zhang, Feng Wang, Feng Wang, Lian-Bing Lin, Lian-Bing Lin

“…The diversity index of the gut microbial community in the group supplemented with potential probiotics was higher than that in the control group, indicating that supplementation with potential probiotics increased gut microbial diversity. At the phylum level, the abundance of Proteobacteria decreased with potential probiotic supplementation, while the abundance of Firmicutes, Actinobacteriota, and Bacteroidota increased. …”
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Rare subcommunity maintains the stability of ecosystem multifunctionality by deterministic assembly processes in subtropical estuaries by Shu Yang, Shu Yang, Qinghua Hou, Nan Li, Pengbin Wang, Huaxian Zhao, Qingxiang Chen, Xinyi Qin, Jiongqing Huang, Xiaoli Li, Nengjian Liao, Gonglingxia Jiang, Ke Dong, Tianyu Zhang

“…Taxonomic analysis revealed Proteobacteria as the predominant phylum among both abundant and rare bacterial taxa. …”
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Comparative Analysis of Gut Microbiota from Rats Induced by Se Deficiency and T-2 Toxin by Yifan Wu, Yi Gong, Yu Zhang, Shujin Li, Chaowei Wang, Yuequan Yuan, Xi Lv, Yanli Liu, Feihong Chen, Sijie Chen, Feiyu Zhang, Xiong Guo, Xi Wang, Yujie Ning, Hongmou Zhao

“…DNA was extracted from fecal samples for PCR amplification, and 16S rDNA sequencing was performed to compare the gut microbiota of rats. At the phylum level, <i>Firmicutes</i> (81.39% vs. 77.06%) and <i>Bacteroidetes</i> (11.11% vs. 14.85%) were dominant in the Se-deficient (SD) group and T-2 exposure (T-2) groups. …”
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Dynamic Variations in Rumen Fermentation Characteristics and Bacterial Community Composition during In Vitro Fermentation by Xiao Wei, Kehui Ouyang, Tanghui Long, Zuogui Liu, Yanjiao Li, Qinghua Qiu

“…Taxonomic analysis at the phylum level showed that the abundances of <i>Proteobacteria</i> and <i>Fibrobacteres</i> were higher in R12 than that in R24, and inverse results were observed in <i>Bacteroidetes</i>, <i>Firmicutes</i>, <i>Cyanobacteria</i>, <i>Verrucomicrobia</i>, <i>Lentisphaerae</i>, and <i>Synergistetes</i> abundances. …”
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Comparative analysis of microbial communities in different growth stages of Dermacentor nuttalli by Li Zhao, Li Zhao, Yi-Min Ma, Bo Yang, Wen-Xiong Han, Wei-Hong Zhao, Hai-Liang Chai, Zhan-Sheng Zhang, Yong-Jie Zhan, Li-Feng Wang, Yu Xing, Lu-Fei Yu, Jin-Ling Wang, Jin-Ling Wang, Yu-Lin Ding, Yu-Lin Ding, Yong-Hong Liu, Yong-Hong Liu

“…A total of 387 genera of 22 phyla were annotated in D. nuttalli, with 9 phyla and 57 genera found throughout all 7 growth stages. The dominant phylum was Proteobacteria; the dominant genera were Arsenophonus and Rickettsia; and the genera with the highest relative abundance in the 7 growth stages were Pseudomonas, Paenalcaligenes, Arsenophonus, Arsenophonus, Pseudomonas, Arsenophonus, and Rickettsia, respectively. …”
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Methionine Supplementation Affects Fecal Bacterial Community and Production Performance in Sika Deer (<i>Cervus nippon</i>) by Yan Wu, Yongzhen Zhu, Xiaolan Guo, Xiaoxu Wang, Weitao Yuan, Cuiliu Ma, Xiaoli Chen, Chao Xu, Kaiying Wang

“…Ruminal fluid free amino acid composition was altered in the three groups of sika deer, with significant changes in aspartic acid, citrulline, valine, cysteine, methionine, histidine and proline. At the phylum level, Firmicutes and Bacteroidetes were highest in the rectal microflora. …”
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Fecal Microbiome Features Associated with Extended-Spectrum β-Lactamase-Producing Enterobacterales Carriage in Dairy Heifers by Adar Cohen, Liat Poupko, Hillary A. Craddock, Yair Motro, Boris Khalfin, Amit Zelinger, Sharon Tirosh-Levy, Shlomo E. Blum, Amir Steinman, Jacob Moran-Gilad

“…There was no significant difference in taxonomic composition between ESBL-PE carriers and noncarriers at the phylum and genus levels. However, LEfSe biomarker discovery analysis identified several genera which were significantly different between carriers and noncarriers. …”
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Altered gut microbiota associated with symptom severity in schizophrenia by Shijia Li, Min Zhuo, Xia Huang, Yuanyuan Huang, Jing Zhou, Dongsheng Xiong, Jiahui Li, Ya Liu, Zhilin Pan, Hehua Li, Jun Chen, Xiaobo Li, Zhiming Xiang, Fengchun Wu, Kai Wu

“…Results The alpha diversity showed no significant differences between the NC and SZ groups, but the beta diversity revealed significant community-level separation in microbiome composition between the two groups (pseudo-F =3.337, p < 0.001, uncorrected). At the phylum level, relatively more Actinobacteria and less Firmicutes (p < 0.05, FDR corrected) were found in the SZ group. …”
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Analysis of Fecal, Salivary, and Tissue Microbiome in Barrett's Esophagus, Dysplasia, and Esophageal Adenocarcinoma by Nikole Radani, Amira Metwaly, Sandra Reitmeier, Theresa Baumeister, Jonas Ingermann, Julia Horstmann, Akanksha Anand, Ingrid Gatz, Florian Kohlmayer, Klaus-Peter Janssen, Julia Slotta-Huspenina, Roland M. Schmid, Dirk Haller, Julian A. Abrams, Michael Quante

“…Microbial community alpha- and beta-diversity, as well as microbial composition at phylum and genus level, were characterized for this cohort and compared with 2 external cohorts: New York cohort and Cooperative Health Research in the Augsburg Region cohort. …”
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Toxic Effect of Anionic Surfactants on Freshwater Sponge <i>Lubomirskia baikalensis</i> and Its Endosymbiotic Microalgae <i>Chlorella</i> sp. by Alyona Alexandrovna Nikonova, Igor Borisovich Mizandrontsev, Boris Nikolaevich Bazhenov, Igor Veniaminovich Khanaev, Olesya Viktorovna Shabalina, Alexandra Alexandrovna Afanasyeva, Tatiana Nikolaevna Avezova, Anna Nikolaevna Chindyavskaya, Alexander Nikolaevich Bityutsky, Andrey Yurievich Kan, Leonid Gennadievich Karikh, Kristina Sergeevna Dubrova, Svetlana Semyonovna Vorobyeva, Olga Yurievna Glyzina

“…<i>Lubomirskia baikalensis</i> (phylum Porifera, order Spongillida) is a unique endemic freshwater sponge of Lake Baikal that contains a complex community of eukaryotic and prokaryotic endosymbiotic microorganisms. …”
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Fosthiazate inhibits root-knot disease and alters rhizosphere microbiome of Cucumis melo var. saccharinus by Huifang Wang, Wanrong Yan, Jiguang Luo, Xiangping Zeng, Zhixiang Zhao, Xiaoli Dou, Meiying Fu

“…Further, a t-test revealed higher differential enrichment of Firmicutes at phylum level and Bacillus at genus level in MF than MCK. …”
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Microbiome-metabolome analysis reveals alterations in the composition and metabolism of caecal microbiota and metabolites with dietary Enteromorpha polysaccharide and Yeast glycopr... by Teketay Wassie, Bei Cheng, Tiantian Zhou, Lumin Gao, Zhuang Lu, Chunyan Xie, Xin Wu, Xin Wu

“…Besides, EP+YG supplementation changed the microbiota composition by altering the community profile at the phylum and genus levels. Furthermore, Spearman correlation analysis indicated a significant correlation between altered microbiota genera vs serum cytokine levels and microbiota genera vs volatile fatty acids production. …”
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Characterization and comparison of the microbiomes and resistomes of colostrum from selectively treated dry cows by Amy Vasquez, Daryl Nydam, Carla Foditsch, Lorin Warnick, Cory Wolfe, Enrique Doster, Paul S. Morley

“…Using analysis of similarities (ANOSIM), overall microbiome composition was found to be similar between treatment groups at the phylum (ANOSIM R = 0.005), class (ANOSIM R = 0.04), and order (ANOSIM R = −0.04) levels. …”
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Metagenomic Analysis of the Outdoor Dust Microbiomes: A Case Study from Abu Dhabi, UAE by Lina Maloukh, Yousef Nazzal, Alagappan Kumarappan, Fares Howari, Lakshmi Kesari Ambika, Rihab Yahmadi, Manish Sharma, Jibran Iqbal, Ahmed A. Al-Taani, Imen Ben Salem, Cijo M. Xavier, Muhamad Naseem

“…A total of 2814 OTUs were identified from those samples with a coverage of more than 99%. In the phylum, all 18 samples had most of the bacterial groups such as <i>Actinobacteria</i>, <i>Proteobacteria</i>, <i>Firmicutes</i>, and <i>Bacteroidetes</i>. …”
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Probiotics for the Treatment of Docetaxel-Related Weight Gain of Breast Cancer Patients—A Single-Center, Randomized, Double-Blind, and Placebo-Controlled Trial by Zhang Juan, Zhang Qing, Liang Yongping, Liyuan Qian, Wei Wu, Yanguang Wen, Jianbin Tong, Jianbin Tong, Jianbin Tong, Boni Ding

“…The change of biliverdin dihydrochloride (B = −0.724, P = 0.02) was inverse correlated with weight gain. One strain of the phylum and three strains of the genus were detected to be significantly different between the two groups. …”
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