An FPGA-based hardware accelerator supporting sensitive sequence homology filtering with profile hidden Markov models by Tim Anderson, Travis J. Wheeler

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Graph-Based Approaches Significantly Improve the Recovery of Antibiotic Resistance Genes From Complex Metagenomic Datasets by Daria Shafranskaya, Daria Shafranskaya, Alexander Chori, Alexander Chori, Anton Korobeynikov, Anton Korobeynikov

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microTrait: A Toolset for a Trait-Based Representation of Microbial Genomes by Ulas Karaoz, Eoin L. Brodie, Eoin L. Brodie

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HIPPI: highly accurate protein family classification with ensembles of HMMs by Nam-phuong Nguyen, Michael Nute, Siavash Mirarab, Tandy Warnow

Subjects: “…Ensemble of profile hidden Markov models…”
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Enhancing Botnet Detection in Network Security Using Profile Hidden Markov Models by Rucha Mannikar, Fabio Di Troia

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Evaluating the usefulness of alignment filtering methods to reduce the impact of errors on evolutionary inferences by Arnaud Di Franco, Raphaël Poujol, Denis Baurain, Hervé Philippe

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