Protein evolution / by 404312 Patthy, Laszlo

The roots of bioinformatics in protein evolution. by Russell F Doolittle

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Extensive parallelism in protein evolution by Poliakov Alexander, Brudno Michael, Kondrashov Fyodor A, Bazykin Georgii A, Dubchak Inna, Kondrashov Alexey S

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Chaperoning viral protein evolution by Phillips, Angela Marie, Ph. D. Massachusetts Institute of Technology

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Molecular clock in neutral protein evolution by Wilke Claus O

“…</p> <p>Results</p> <p>Here, I study the behavior of the molecular clock in <it>in silico </it>protein evolution as a function of mutation rate and population size. …”
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Thermodynamic system drift in protein evolution. by Kathryn M Hart, Michael J Harms, Bryan H Schmidt, Carolyn Elya, Joseph W Thornton, Susan Marqusee

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The effects of network neighbours on protein evolution. by Guang-Zhong Wang, Martin J Lercher

“…The strongest known predictor of the rate of protein evolution remains expression level. We confirmed the previous observation that similar expression levels of neighbours indeed explain their similar evolution rates in protein-protein networks, and showed that the same is true for metabolic networks. …”
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Human Coronavirus: Envelope Protein Evolution by Rutuja Ankulkar

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Quantitative Analysis of Protein Evolution: The Phylogeny of Osteopontin by Xia Wang, Georg F. Weber

“…We build on our prior phylogenetic analysis of the cytokine Osteopontin to validate the quantitative approach toward the study of protein evolution. Phylogenetic trees constructed from the number strings differentiate among all sequences. …”
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Correction: thermodynamic system drift in protein evolution. by PLOS Biology Staff

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HIV-specific probabilistic models of protein evolution. by David C Nickle, Laura Heath, Mark A Jensen, Peter B Gilbert, James I Mullins, Sergei L Kosakovsky Pond

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Bursts of amino acid replacements in protein evolution by Anastasia V. Stolyarova, Georgii A. Bazykin, Tatyana V. Neretina, Alexey S. Kondrashov

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Protein evolution of ANTP and PRD homeobox genes. by Fonseca, N, Vieira, C, Holland, P, Vieira, J

Protein evolution of ANTP and PRD homeobox genes by Fonseca, N, Vieira, C, Holland, P, Vieira, J

Aggregation is a Context-Dependent Constraint on Protein Evolution by Michele Monti, Michele Monti, Alexandros Armaos, Alexandros Armaos, Marco Fantini, Annalisa Pastore, Gian Gaetano Tartaglia, Gian Gaetano Tartaglia, Gian Gaetano Tartaglia, Gian Gaetano Tartaglia

“…Thus, understanding the relationship between protein evolution and aggregation is an important goal. …”
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Photoconvertible Fluorescent Proteins and the Role of Dynamics in Protein Evolution by Rebekka M. Wachter

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Protein evolution via amino acid and codon elimination. by Lise Goltermann, Marie Sofie Yoo Larsen, Rajat Banerjee, Andreas C Joerger, Michael Ibba, Thomas Bentin

“…Using GFP as the model protein, we present a strategy, termed protein evolution via amino acid and codon elimination, through which simplified, native-like polypeptides encoded by a reduced genetic code were obtained via screening of reduced-size ensembles.…”
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Rate and breadth of protein evolution are only weakly correlated by Naumenko Sergey A, Kondrashov Alexey S

“…</p> <p>Conclusions</p> <p>Rate and breadth are two distinct, and only weakly correlated, characteristics of protein evolution. The most likely explanation of their positive correlation is heterogeneity of selective constraint, such that less functionally important sites evolve faster and can accept more amino acids.…”
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Divergence, recombination and retention of functionality during protein evolution by Xu Yanlong O, Hall Randall W, Goldstein Richard A, Pollock David D

“…To address this, we have been simulating protein evolution in the context of structure and function using lattice models of proteins and ligands (or substrates). …”
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β-Propeller blades as ancestral peptides in protein evolution. by Klaus O Kopec, Andrei N Lupas

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