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Deep learning methods for protein structure prediction
Published 2024-09-01Subjects: Get full text
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Deep template-based protein structure prediction.
Published 2021-05-01“…<h4>Motivation</h4>Protein structure prediction has been greatly improved by deep learning, but most efforts are devoted to template-free modeling. …”
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Constraint Guided Neighbor Generation for Protein Structure Prediction
Published 2022-01-01Subjects: “…Protein structure prediction…”
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Addressing the Role of Conformational Diversity in Protein Structure Prediction.
Published 2016-01-01Get full text
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Protein structure prediction using bidirectional neural networks
Published 2010Get full text
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Protein structure prediction begins well but ends badly.
Published 2010“…Free modeling results from recent critical assessment of techniques for protein structure prediction (CASP) experiments are evaluated; as is the most up-to-date data from EVA, a fully automated blind test of secondary structure prediction servers. …”
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Biologically inspired de novo protein structure prediction
Published 2015“…<p>Fragment-based approaches are the current standard for <em>de novo</em> protein structure prediction. These approaches rely on accurate and reliable fragment libraries to generate good structural models. …”
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PSPP: a protein structure prediction pipeline for computing clusters.
Published 2009-07-01“…This gap can be partially filled by using computational protein structure prediction. While structure prediction Web servers are a notable option, they often restrict the number of sequence queries and/or provide a limited set of prediction methodologies. …”
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Peptide binder design with inverse folding and protein structure prediction
Published 2023-10-01Get full text
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Using metagenomic data to boost protein structure prediction and discovery
Published 2022-01-01“…Here, we review how this information has been used in protein structure prediction and protein discovery. We begin by presenting some widely used metagenomic databases and analyze in detail how metagenomic data has contributed to the impressive improvement in the accuracy of structure prediction methods in recent years. …”
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Deep learning for protein structure prediction and design—progress and applications
Published 2024-01-01Get full text
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Protein Structure Prediction: Challenges, Advances, and the Shift of Research Paradigms
Published 2023-10-01Subjects: Get full text
Article