A dynamic RNA loop in an IRES affects multiple steps of elongation factor-mediated translation initiation by Marisa D Ruehle, Haibo Zhang, Ryan M Sheridan, Somdeb Mitra, Yuanwei Chen, Ruben L Gonzalez Jr, Barry S Cooperman, Jeffrey S Kieft

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A bacterial riboswitch class for the thiamin precursor HMP-PP employs a terminator-embedded aptamer by Ruben M Atilho, Gayan Mirihana Arachchilage, Etienne B Greenlee, Kirsten M Knecht, Ronald R Breaker

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Fatgraph models of RNA structure by Huang Fenix, Reidys Christian, Rezazadegan Reza

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Multi-objective genetic algorithm for pseudoknotted RNA sequence design by Akito eTaneda

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Bi-objective integer programming for RNA secondary structure prediction with pseudoknots by Audrey Legendre, Eric Angel, Fariza Tahi

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Knotify+: Toward the Prediction of RNA H-Type Pseudoknots, Including Bulges and Internal Loops by Evangelos Makris, Angelos Kolaitis, Christos Andrikos, Vrettos Moulos, Panayiotis Tsanakas, Christos Pavlatos

Subjects: “…H-type pseudoknot structure…”
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Salt-Dependent RNA Pseudoknot Stability: Effect of Spatial Confinement by Chenjie Feng, Ya-Lan Tan, Yu-Xuan Cheng, Ya-Zhou Shi, Zhi-Jie Tan

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Investigating the correlation between Xrn1-resistant RNAs and frameshifter pseudoknots by Ivar W. Dilweg, Megan G. Oskam, Sophie Overbeek, René C.L. Olsthoorn

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Theoretical Search for RNA Folding Nuclei by Leonid B. Pereyaslavets, Oxana V. Galzitskaya

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REDfold: accurate RNA secondary structure prediction using residual encoder-decoder network by Chun-Chi Chen, Yi-Ming Chan

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Syntactic Pattern Recognition for the Prediction of L-Type Pseudoknots in RNA by Christos Koroulis, Evangelos Makris, Angelos Kolaitis, Panayiotis Tsanakas, Christos Pavlatos

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Knotify: An Efficient Parallel Platform for RNA Pseudoknot Prediction Using Syntactic Pattern Recognition by Christos Andrikos, Evangelos Makris, Angelos Kolaitis, Georgios Rassias, Christos Pavlatos, Panayiotis Tsanakas

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An adaptive defect weighted sampling algorithm to design pseudoknotted RNA secondary structures by Kasra Zandi, Gregory Butler, Nawwaf Kharma, Nawwaf Kharma

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Tolerance of Senecavirus A to Mutations in Its Kissing-Loop or Pseudoknot Structure Computationally Predicted in 3′ Untranslated Region by Fuxiao Liu, Di Zhao, Di Zhao, Ning Wang, Ziwei Li, Ziwei Li, Yaqin Dong, Shuang Liu, Feng Zhang, Jin Cui, Hailan Meng, Bo Ni, Rong Wei, Hu Shan

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RCPred: RNA complex prediction as a constrained maximum weight clique problem by Audrey Legendre, Eric Angel, Fariza Tahi

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KnotAli: informed energy minimization through the use of evolutionary information by Mateo Gray, Sean Chester, Hosna Jabbari

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ATTfold: RNA Secondary Structure Prediction With Pseudoknots Based on Attention Mechanism by Yili Wang, Yili Wang, Yuanning Liu, Yuanning Liu, Shuo Wang, Shuo Wang, Zhen Liu, Zhen Liu, Zhen Liu, Yubing Gao, Yubing Gao, Hao Zhang, Hao Zhang, Liyan Dong, Liyan Dong

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New models and algorithms for RNA pseudoknot order assignment by Zok Tomasz, Badura Jan, Swat Sylwester, Figurski Kacper, Popenda Mariusz, Antczak Maciej

Subjects: “…rna pseudoknot order…”
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TransUFold: Unlocking the structural complexity of short and long RNA with pseudoknots by Yunxiang Wang, Hong Zhang, Zhenchao Xu, Shouhua Zhang, Rui Guo

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Comparative Analysis of Novel Strains of Porcine Astrovirus Type 3 in the USA by Franco Matias Ferreyra, Karen Harmon, Laura Bradner, Eric Burrough, Rachel Derscheid, Drew R. Magstadt, Alyona Michael, Marcelo Nunes de Almeida, Loni Schumacher, Chris Siepker, Panchan Sitthicharoenchai, Gregory Stevenson, Bailey Arruda

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