Experimental Evolution Reveals Unifying Systems-Level Adaptations but Diversity in Driving Genotypes by Erol S. Kavvas, Christopher P. Long, Anand Sastry, Saugat Poudel, Maciek R. Antoniewicz, Yang Ding, Elsayed T. Mohamed, Richard Szubin, Jonathan M. Monk, Adam M. Feist, Bernhard O. Palsson

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Regulation of Toxin Production in Clostridium perfringens by Kaori Ohtani, Tohru Shimizu

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The gene regulatory network of Staphylococcus aureus ST239-SCCmecIII strain Bmb9393 and assessment of genes associated with the biofilm in diverse backgrounds by Maiana de Oliveira Cerqueira e Costa, Ana Paula Barbosa do Nascimento, Yasmmin Cortes Martins, Marcelo Trindade dos Santos, Agnes Marie de Sá Figueiredo, Ernesto Perez-Rueda, Marisa Fabiana Nicolás

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Improving the Inference of Gene Expression Regulatory Networks with Data Aggregation Approach by Atefeh Naseri, Seyed Mohammad Hossein Hasheminejad, Mehran Sharghi

Subjects: “…gene expression regulatory network…”
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Phosphorylation network rewiring by gene duplication by Luca Freschi, Mathieu Courcelles, Pierre Thibault, Stephen W Michnick, Christian R Landry

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MicroRNA profiling the resurrection plant Haberlea rhodopensis unveils essential regulators of survival under severe drought by E. APOSTOLOVA, M. GOZMANOVA, L. NACHEVA, Z. IVANOVA, V. TONEVA, I. MINKOV, V. BAEV, G. YAHUBYAN

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The Neurospora Transcription Factor ADV-1 Transduces Light Signals and Temporal Information to Control Rhythmic Expression of Genes Involved in Cell Fusion by Rigzin Dekhang, Cheng Wu, Kristina M. Smith, Teresa M. Lamb, Matthew Peterson, Erin L. Bredeweg, Oneida Ibarra, Jillian M. Emerson, Nirmala Karunarathna, Anna Lyubetskaya, Elham Azizi, Jennifer M. Hurley, Jay C. Dunlap, James E. Galagan, Michael Freitag, Matthew S. Sachs, Deborah Bell-Pedersen

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An experimentally validated network of nine haematopoietic transcription factors reveals mechanisms of cell state stability by Judith Schütte, Huange Wang, Stella Antoniou, Andrew Jarratt, Nicola K Wilson, Joey Riepsaame, Fernando J Calero-Nieto, Victoria Moignard, Silvia Basilico, Sarah J Kinston, Rebecca L Hannah, Mun Chiang Chan, Sylvia T Nürnberg, Willem H Ouwehand, Nicola Bonzanni, Marella FTR de Bruijn, Berthold Göttgens

Subjects: “…regulatory network…”
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Coordination of frontline defense mechanisms under severe oxidative stress by Amardeep Kaur, Phu T Van, Courtney R Busch, Courtney K Robinson, Min Pan, Wyming Lee Pang, David J Reiss, Jocelyne DiRuggiero, Nitin S Baliga

Subjects: “…gene regulatory network…”
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Vasohibin-1 is identified as a master-regulator of endothelial cell apoptosis using gene network analysis by Affara Muna, Sanders Debbie, Araki Hiromitsu, Tamada Yoshinori, Dunmore Benjamin J, Humphreys Sally, Imoto Seiya, Savoie Christopher, Miyano Satoru, Kuhara Satoru, Jeffries David, Print Cristin, Charnock-Jones D Stephen

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Genome-wide errant targeting by Hairy by Kurtulus Kok, Ahmet Ay, Li M Li, David N Arnosti

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Editorial: Construction of transcriptional and alternative splicing regulatory networks by Wenbin Guo, Cristiane Paula Gomes Calixto, Zongtao Sun

Subjects: “…gene regulatory network…”
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Construction and analysis of degradome-dependent microRNA regulatory networks in soybean by Rui Wang, Zhongyi Yang, Yuhan Fei, Jiejie Feng, Hui Zhu, Fang Huang, Hongsheng Zhang, Ji Huang

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Dynamic immune and exosome transcriptomic responses in patients undergoing psychostimulant methamphetamine withdrawal by Hongjin Wu, Hongjin Wu, Hongjin Wu, Zunyue Zhang, Zunyue Zhang, Yuru Ma, Fengrong Chen, Pu Xiong, Zhenrong Xie, Guo Ding, Juehua Yu, Juehua Yu, Kunhua Wang, Kunhua Wang

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Integration of the metabolome and transcriptome reveals the metabolites and genes related to nutritional and medicinal value in Coriandrum sativum by Tong WU, Shu-yan FENG, Qi-hang YANG, Preetida J BHETARIYA, Ke GONG, Chun-lin CUI, Jie SONG, Xiao-rui PING, Qiao-ying PEI, Tong YU, Xiao-ming SONG

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Integrated Transcriptomic and Proteomic Analysis Reveals Molecular Mechanisms of the Cold Stress Response during the Overwintering Period in Blueberries (<i>Vaccinium</i> spp.) by Xin Wei, Hongguang Wang, Dan Guo, Baisong Wang, Xiao Zhang, Jian Wang, Youchun Liu, Xingdong Wang, Cheng Liu, Wenxuan Dong

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Identification and Expression Analysis of Long Noncoding RNAs in Fat-Tail of Sheep Breeds by Mohammad Reza Bakhtiarizadeh, Seyed Alireza Salami

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Integrative Analysis of Microarray Data to Reveal Regulation Patterns in the Pathogenesis of Hepatocellular Carcinoma by Juan Chen, Zhenwen Qian, Fengling Li, Jinzhi Li, Yi Lu

Subjects: “…transcriptional regulatory network…”
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Integrative Analysis of Gene Expression and miRNAs Reveal Biological Pathways Associated with Bud Paradormancy and Endodormancy in Grapevine by Shuchi Smita, Michael Robben, Anup Deuja, Monica Accerbi, Pamela J. Green, Senthil Subramanian, Anne Fennell

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An organ boundary‐enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation by Caihuan Tian, Xiaoni Zhang, Jun He, Haopeng Yu, Ying Wang, Bihai Shi, Yingying Han, Guoxun Wang, Xiaoming Feng, Cui Zhang, Jin Wang, Jiyan Qi, Rong Yu, Yuling Jiao

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