uap: reproducible and robust HTS data analysis by Christoph Kämpf, Michael Specht, Alexander Scholz, Sven-Holger Puppel, Gero Doose, Kristin Reiche, Jana Schor, Jörg Hackermüller

Subjects: “…Sequencing data analysis…”
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A graph-based algorithm for estimating clonal haplotypes of tumor sample from sequencing data by Yixuan Wang, Xuanping Zhang, Shuai Ding, Yu Geng, Jianye Liu, Zhongmeng Zhao, Rong Zhang, Xiao Xiao, Jiayin Wang

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Construction of a circadian rhythm-relevant gene signature for hepatocellular carcinoma prognosis, immunotherapy and chemosensitivity prediction by Zhiyu Ye, Ying Du, Wenguan Yu, Yunshou Lin, Li Zhang, Xiaoyu Chen

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Is an SV caller compatible with sequencing data? An online recommendation tool to automatically recommend the optimal caller based on data features by Shenjie Wang, Shenjie Wang, Yuqian Liu, Yuqian Liu, Juan Wang, Juan Wang, Juan Wang, Xiaoyan Zhu, Xiaoyan Zhu, Yuzhi Shi, Xuwen Wang, Xuwen Wang, Tao Liu, Xiao Xiao, Xiao Xiao, Jiayin Wang, Jiayin Wang

Subjects: “…sequencing data analysis…”
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What makes TMB an ambivalent biomarker for immunotherapy? A subtle mismatch between the sample-based design of variant callers and real clinical cohort by Yuqian Liu, Yuqian Liu, Shenjie Wang, Shenjie Wang, Yixuan Wang, Yifei Li, Xiaoyan Zhu, Xiaoyan Zhu, Xin Lai, Xin Lai, Xuanping Zhang, Xuanping Zhang, Xuqi Li, Xiao Xiao, Xiao Xiao, Jiayin Wang, Jiayin Wang

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Assessing Transcriptome Quality in Patch-Seq Datasets by Shreejoy J. Tripathy, Shreejoy J. Tripathy, Lilah Toker, Lilah Toker, Claire Bomkamp, B. Ogan Mancarci, B. Ogan Mancarci, Manuel Belmadani, Manuel Belmadani, Paul Pavlidis, Paul Pavlidis

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Accurately estimating the length distributions of genomic micro-satellites by tumor purity deconvolution by Yixuan Wang, Xuanping Zhang, Xiao Xiao, Fei-Ran Zhang, Xinxing Yan, Xuan Feng, Zhongmeng Zhao, Yanfang Guan, Jiayin Wang

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HRD-MILN: Accurately estimate tumor homologous recombination deficiency status from targeted panel sequencing data by Xuwen Wang, Xuwen Wang, Ying Xu, Ying Xu, Yinbin Zhang, Shenjie Wang, Shenjie Wang, Xuanping Zhang, Xuanping Zhang, Xin Yi, Shuqun Zhang, Jiayin Wang, Jiayin Wang

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Differential Contributions of Fibroblast Subpopulations to Intercellular Communication in Eosinophilic Esophagitis by Tao Li, Matthew Salomon, Ling Shao, Atousa Khalatbari, Joshua D. Castle, Anisa Shaker

Subjects: “…single-cell RNA sequencing data analysis…”
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OCRClassifier: integrating statistical control chart into machine learning framework for better detecting open chromatin regions by Xin Lai, Xin Lai, Min Liu, Yuqian Liu, Xiaoyan Zhu, Jiayin Wang, Jiayin Wang

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Single-cell RNA-seq analyses show that long non-coding RNAs are conspicuously expressed in Schistosoma mansoni gamete and tegument progenitor cell populations by David A. Morales-Vicente, David A. Morales-Vicente, Lu Zhao, Gilbert O. Silveira, Gilbert O. Silveira, Ana C. Tahira, Murilo S. Amaral, James J. Collins, Sergio Verjovski-Almeida, Sergio Verjovski-Almeida

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Dimensionality Reduction and Louvain Agglomerative Hierarchical Clustering for Cluster-Specified Frequent Biomarker Discovery in Single-Cell Sequencing Data by Soumita Seth , Saurav Mallik , Tapas Bhadra , Zhongming Zhao , Zhongming Zhao 

Subjects: “…single-cell sequencing data analysis…”
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ST-DeepGait: A Spatiotemporal Deep Learning Model for Human Gait Recognition by Latisha Konz, Andrew Hill, Farnoush Banaei-Kashani

Subjects: “…spatiotemporal sequence data analysis…”
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Surface symmetry determination by a deep learning application of optical second-harmonic generation results by D.G. Jeong, J.S. Lee

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Bioinformatics methods for high-throughput DNA sequencing data by xiaojuan Zhan, dengju Yao, huaiqiu Zhu

Subjects: “…high-throughput DNA sequencing;bioinformatics;short read sequence data compression;short read sequence data splicing;short read sequence data analysis…”
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