Integration of single‐cell transcriptome and proteome technologies: Toward spatial resolution levels by Liyong He, Wenjia Wang, Kaitong Dang, Qinyu Ge, Xiangwei Zhao

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scAI: an unsupervised approach for the integrative analysis of parallel single-cell transcriptomic and epigenomic profiles by Suoqin Jin, Lihua Zhang, Qing Nie

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Haematopoietic ageing through the lens of single-cell technologies by Paulina M. Strzelecka, Frederik Damm

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Shared enhancer gene regulatory networks between wound and oncogenic programs by Swann Floc'hlay, Ramya Balaji, Dimitrije Stanković, Valerie M Christiaens, Carmen Bravo González-Blas, Seppe De Winter, Gert J Hulselmans, Maxime De Waegeneer, Xiaojiang Quan, Duygu Koldere, Mardelle Atkins, Georg Halder, Mirka Uhlirova, Anne-Kathrin Classen, Stein Aerts

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Editorial: Stromal and immune microenvironment in breast cancer metastasis by Xin Lu, Xin Lu, Xia Liu, Toni Celià-Terrassa, Guangwen Ren

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scDART: integrating unmatched scRNA-seq and scATAC-seq data and learning cross-modality relationship simultaneously by Ziqi Zhang, Chengkai Yang, Xiuwei Zhang

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Fibroblast heterogeneity and functions: insights from single-cell sequencing in wound healing, breast cancer, ovarian cancer and melanoma by Omar Lujano Olazaba, Jeffrey Farrow, Teresa Monkkonen

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Leveraging prior knowledge to infer gene regulatory networks from single-cell RNA-sequencing data by Marco Stock, Corinna Losert, Matteo Zambon, Niclas Popp, Gabriele Lubatti, Eva Hörmanseder, Matthias Heinig, Antonio Scialdone

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Single-cell protein-DNA interactomics and multiomics tools for deciphering genome regulation by Xiong Haiqing, Wang Runyu, He Aibin

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Sequential drug treatment targeting cell cycle and cell fate regulatory programs blocks non-genetic cancer evolution in acute lymphoblastic leukemia by Alena Malyukova, Mari Lahnalampi, Ton Falqués-Costa, Petri Pölönen, Mikko Sipola, Juha Mehtonen, Susanna Teppo, Karen Akopyan, Johanna Viiliainen, Olli Lohi, Anna K. Hagström-Andersson, Merja Heinäniemi, Olle Sangfelt

Subjects: “…Single-cell multiomics…”
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Joint cell segmentation and cell type annotation for spatial transcriptomics by Russell Littman, Zachary Hemminger, Robert Foreman, Douglas Arneson, Guanglin Zhang, Fernando Gómez‐Pinilla, Xia Yang, Roy Wollman

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Regulatory analysis of single cell multiome gene expression and chromatin accessibility data with scREG by Zhana Duren, Fengge Chang, Fnu Naqing, Jingxue Xin, Qiao Liu, Wing Hung Wong

Subjects: “…Single cell multiome…”
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SARS-CoV-2 infection induces a long-lived pro-inflammatory transcriptional profile by Jia-Yuan Zhang, Justin P. Whalley, Julian C. Knight, Linda S. Wicker, John A. Todd, Ricardo C. Ferreira

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HIPSD&R-seq enables scalable genomic copy number and transcriptome profiling by Jan Otoničar, Olga Lazareva, Jan-Philipp Mallm, Milena Simovic-Lorenz, George Philippos, Pooja Sant, Urja Parekh, Linda Hammann, Albert Li, Umut Yildiz, Mikael Marttinen, Judith Zaugg, Kyung Min Noh, Oliver Stegle, Aurélie Ernst

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Single-cell and spatial analyses of cancer cells: toward elucidating the molecular mechanisms of clonal evolution and drug resistance acquisition by Satoi Nagasawa, Yukie Kashima, Ayako Suzuki, Yutaka Suzuki

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Destin2: Integrative and cross-modality analysis of single-cell chromatin accessibility data by Peter Y. Guan, Jin Seok Lee, Lihao Wang, Kevin Z. Lin, Wenwen Mei, Li Chen, Yuchao Jiang, Yuchao Jiang, Yuchao Jiang

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