SURGE: uncovering context-specific genetic-regulation of gene expression from single-cell RNA sequencing using latent-factor models by Benjamin J. Strober, Karl Tayeb, Joshua Popp, Guanghao Qi, M. Grace Gordon, Richard Perez, Chun Jimmie Ye, Alexis Battle

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Developmental single-cell transcriptomics of hypothalamic POMC neurons reveal the genetic trajectories of multiple neuropeptidergic phenotypes by Hui Yu, Marcelo Rubinstein, Malcolm J Low

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T cells modulate the microglial response to brain ischemia by Corinne Benakis, Alba Simats, Sophie Tritschler, Steffanie Heindl, Simon Besson-Girard, Gemma Llovera, Kelsey Pinkham, Anna Kolz, Alessio Ricci, Fabian J Theis, Stefan Bittner, Özgün Gökce, Anneli Peters, Arthur Liesz

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Intestinal cell diversity and treatment responses in a parasitic nematode at single cell resolution by Rahul Tyagi, Bruce A Rosa, Amanda Swain, Maxim N Artyomov, Douglas P Jasmer, Makedonka Mitreva

Subjects: “…Single-cell transcriptomics…”
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Influenza virus transcription and progeny production are poorly correlated in single cells by David J Bacsik, Bernadeta Dadonaite, Andrew Butler, Allison J Greaney, Nicholas S Heaton, Jesse D Bloom

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Single-cell transcriptome analysis reveals immune microenvironment changes and insights into the transition from DCIS to IDC with associated prognostic genes by Yidi Sun, Zhuoyu Pan, Ziyi Wang, Haofei Wang, Leyi Wei, Feifei Cui, Quan Zou, Zilong Zhang

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Pro-inflammatory feedback loops define immune responses to pathogenic Lentivirus infection by Aaron J. Wilk, Joshua O. Marceau, Samuel W. Kazer, Ira Fleming, Vincent N. Miao, Jennyfer Galvez-Reyes, Jason T. Kimata, Alex K. Shalek, Susan Holmes, Julie Overbaugh, Catherine A. Blish

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ddSeeker: a tool for processing Bio-Rad ddSEQ single cell RNA-seq data by Dario Romagnoli, Giulia Boccalini, Martina Bonechi, Chiara Biagioni, Paola Fassan, Roberto Bertorelli, Veronica De Sanctis, Angelo Di Leo, Ilenia Migliaccio, Luca Malorni, Matteo Benelli

Subjects: “…Single-cell transcriptomics…”
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Single-cell and spatial transcriptomics reveal metastasis mechanism and microenvironment remodeling of lymph node in osteosarcoma by Yun Liu, Mingwei He, Haijun Tang, Tianyu Xie, Yunhua Lin, Shangyu Liu, Jiming Liang, Feicui Li, Kai Luo, Mingxiu Yang, Hongcai Teng, Xiaoting Luo, Juliang He, Shijie Liao, Qian Huang, Wenyu Feng, Xinli Zhan, Qingjun Wei

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Single‐Cell Integration of BMD GWAS Results Prioritize Candidate Genes Influencing Age‐Related Bone Loss by Madison L. Doolittle, Sundeep Khosla, Dominik Saul

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Profiling the bloodstream form and procyclic form Trypanosoma brucei cell cycle using single-cell transcriptomics by Emma M Briggs, Catarina A Marques, Guy R Oldrieve, Jihua Hu, Thomas D Otto, Keith R Matthews

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Signatures of malignant cells and novel therapeutic targets revealed by single‐cell sequencing in lung adenocarcinoma by Jiaqi Liang, Zhencong Chen, Yiwei Huang, Guoshu Bi, Yunyi Bian, Xing Jin, Huan Zhang, Qihai Sui, Cheng Zhan, Qun Wang

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Skin single-cell transcriptomics reveals a core of sebaceous gland-relevant genes shared by mice and humans by Torsten Thalheim, Marlon R. Schneider

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Remodeling of the osteoimmune microenvironment after biomaterials implantation in murine tibia: Single-cell transcriptome analysis by Jia Li, Congrui Zhao, Yangbo Xu, Lu Song, Yanqi Chen, Yuzi Xu, Yang Ma, Siyuan Wang, Antian Xu, Fuming He

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A single-cell transcriptomic atlas of the adult Drosophila ventral nerve cord by Aaron M Allen, Megan C Neville, Sebastian Birtles, Vincent Croset, Christoph Daniel Treiber, Scott Waddell, Stephen F Goodwin

Subjects: “…single-cell transcriptomics…”
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Deciphering Müller cell heterogeneity signatures in diabetic retinopathy across species: an integrative single-cell analysis by Xiyuan Deng, Ya Mo, Xiuying Zhu

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Single-cell transcriptomics in the context of long-read nanopore sequencing by Soren Hayrabedyan, Petya Kostova, Viktor Zlatkov, Krassimira Todorova

Subjects: “…single cell transcriptomics…”
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Single-cell transcriptomics technology and its application in limb regeneration research by Yin Fuling, Lin Zijie, Wang Yaning, Zhang Hongbo

Subjects: “…single-cell transcriptomics…”
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Predicting drug response from single-cell expression profiles of tumours by Simona Pellecchia, Gaetano Viscido, Melania Franchini, Gennaro Gambardella

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Identifying foetal forebrain interneurons as a target for monogenic autism risk factors and the polygenic 16p11.2 microdeletion by Yifei Yang, Sam A. Booker, James M. Clegg, Idoia Quintana-Urzainqui, Anna Sumera, Zrinko Kozic, Owen Dando, Sandra Martin Lorenzo, Yann Herault, Peter C. Kind, David J. Price, Thomas Pratt

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