Somatic Copy-Number Alterations in Plasma Circulating Tumor DNA from Advanced EGFR-Mutated Lung Adenocarcinoma Patients by Anna Buder, Ellen Heitzer, Julie Waldispühl-Geigl, Sabrina Weber, Tina Moser, Maximilian J. Hochmair, Klaus Hackner, Peter Errhalt, Ulrike Setinek, Martin Filipits

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Targeted Genomic Screen Reveals Focal Long Non-Coding RNA Copy Number Alterations in Cancer Cell Lines by Pieter-Jan Volders, Steve Lefever, Shalina Baute, Justine Nuytens, Katrien Vanderheyden, Björn Menten, Pieter Mestdagh, Jo Vandesompele

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Multi-Omics Profiling Identifies Risk Hypoxia-Related Signatures for Ovarian Cancer Prognosis by Xingyu Chen, Hua Lan, Dong He, Runshi Xu, Yao Zhang, Yaxin Cheng, Haotian Chen, Songshu Xiao, Ke Cao

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SOX2 dosage sustains tumor-promoting inflammation to drive disease aggressiveness by modulating the FOSL2/IL6 axis by Abdel Jelil Njouendou, Tibor Szarvas, Arnol Auvaker Zebaze Tiofack, Rovaldo Nguims Kenfack, Pamela Derliche Tonouo, Sidonie Noa Ananga, Esther H. M. Dina Bell, Gustave Simo, Jörg D. Hoheisel, Jens T. Siveke, Smiths S. Lueong

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Robustness of the Autophagy Pathway to Somatic Copy Number Losses by Pierfrancesco Polo, Niklas Gremke, Thorsten Stiewe, Michael Wanzel

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Low-cost and clinically applicable copy number profiling using repeat DNA by Sam Abujudeh, Sebastian S. Zeki, Meta C.J. van Lanschot, Mark Pusung, Jamie M.J. Weaver, Xiaodun Li, Ayesha Noorani, Andrew J. Metz, Jan Bornschein, Lawrence Bower, Ahmad Miremadi, Rebecca C. Fitzgerald, Edward R. Morrissey, Andy G. Lynch

Subjects: “…Somatic copy number alterations…”
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DNA cytosine deamination is associated with recurrent Somatic Copy Number Alterations in stomach adenocarcinoma by Yilin Shi, Huangxuan Shen

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MEDICC2: whole-genome doubling aware copy-number phylogenies for cancer evolution by Tom L. Kaufmann, Marina Petkovic, Thomas B. K. Watkins, Emma C. Colliver, Sofya Laskina, Nisha Thapa, Darlan C. Minussi, Nicholas Navin, Charles Swanton, Peter Van Loo, Kerstin Haase, Maxime Tarabichi, Roland F. Schwarz

Subjects: “…Somatic copy-number alterations…”
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Somatic copy number alteration and fragmentation analysis in circulating tumor DNA for cancer screening and treatment monitoring in colorectal cancer patients by Ariane Hallermayr, Tobias Wohlfrom, Verena Steinke-Lange, Anna Benet-Pagès, Florentine Scharf, Ellen Heitzer, Ulrich Mansmann, Christopher Haberl, Maike de Wit, Holger Vogelsang, Markus Rentsch, Elke Holinski-Feder, Julia M. A. Pickl

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Genomic analyses of germline and somatic variation in high-grade serous ovarian cancer by A. W. Adamson, Y. C. Ding, L. Steele, L. A. Leong, R. Morgan, M. T. Wakabayashi, E. S. Han, T. H. Dellinger, P. S. Lin, A. A. Hakim, S. Wilczynski, C. D. Warden, S. Tao, V. Bedell, M. C. Cristea, S. L. Neuhausen

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Somatic Copy Number Alterations in Colorectal Cancer Lead to a Differentially Expressed ceRNA Network (ceRNet) by Héctor Herrera-Orozco, Verónica García-Castillo, Eduardo López-Urrutia, Antonio Daniel Martinez-Gutierrez, Eloy Pérez-Yepez, Oliver Millán-Catalán, David Cantú de León, César López-Camarillo, Nadia J. Jacobo-Herrera, Mauricio Rodríguez-Dorantes, Rosalío Ramos-Payán, Carlos Pérez-Plasencia

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oncoNcRNA: A Web Portal for Exploring the Non-Coding RNAs with Oncogenic Potentials in Human Cancers by Ze-Lin Wang, Xiao-Qin Zhang, Hui Zhou, Jian-Hua Yang, Liang-Hu Qu

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Genome‐wide analysis of colorectal cancer based on gene‐based somatic copy number alterations during neoplastic progression within the same tumor by Shun Yamada, Mitsumasa Osakabe, Noriyuki Uesugi, Naoki Yanagawa, Takayuki Matsumoto, Hiromu Suzuki, Tamotsu Sugai

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Impressive response to immunotherapy in a metastatic gastric cancer patient: could somatic copy number alterations help patient selection? by Gustavo dos Santos Fernandes, Daniel da Motta Girardi, Luiza Dib Batista Bugiato Faria, João Paulo Giacomini Bernardes, Renata de Almeida Coudry

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Identifying the driver miRNAs with somatic copy number alterations driving dysregulated ceRNA networks in cancers by Renjie Dou, Shaobo Kang, Huan Yang, Wanmei Zhang, Yijing Zhang, Yuanyuan Liu, Yanyan Ping, Bo Pang

Subjects: “…Somatic copy number alteration…”
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Predicting Stage-Specific Recurrent Aberrations From Somatic Copy Number Dataset by Chaima Aouiche, Bolin Chen, Bolin Chen, Bolin Chen, Xuequn Shang, Xuequn Shang

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Increased chromosomal instability characterizes metastatic renal cell carcinoma by Qin Ma, Jilu Wang, Jie Qi, Ding Peng, Bao Guan, Jianye Zhang, Zhongwu Li, Hongxian Zhang, Ting Li, Yue Shi, Xuesong Li, Liqun Zhou, Ke Chen, Weimin Ci

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Identifying Key Somatic Copy Number Alterations Driving Dysregulation of Cancer Hallmarks in Lower-Grade Glioma by Yao Zhou, Shuai Wang, Haoteng Yan, Bo Pang, Xinxin Zhang, Lin Pang, Yihan Wang, Jinyuan Xu, Jing Hu, Yujia Lan, Yanyan Ping

Subjects: “…somatic copy number alteration…”
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Genomic profiling of colorectal cancer with isolated lung metastasis by Nan Zhang, Jiabo Di, Zaozao Wang, Pin Gao, Beihai Jiang, Xiangqian Su

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hsegHMM: hidden Markov model-based allele-specific copy number alteration analysis accounting for hypersegmentation by Hyoyoung Choo-Wosoba, Paul S. Albert, Bin Zhu

Subjects: “…Allele-specific somatic copy number alteration…”
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