Spatiotemporally deciphering the mysterious mechanism of persistent HPV‐induced malignant transition and immune remodelling from HPV‐infected normal cervix, precancer to cervical c... by Chenyan Guo, Xinyu Qu, Xiaoyan Tang, Yu Song, Jue Wang, Keqin Hua, Junjun Qiu

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Liver in infections: a single-cell and spatial transcriptomics perspective by Ju Zou, Jie Li, Xiao Zhong, Daolin Tang, Xuegong Fan, Ruochan Chen

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Computational modeling for deciphering tissue microenvironment heterogeneity from spatially resolved transcriptomics by Chuanchao Zhang, Lequn Wang, Qianqian Shi

Subjects: “…Spatial transcriptome…”
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Deconvolution algorithms for inference of the cell-type composition of the spatial transcriptome by Yingkun Zhang, Xinrui Lin, Zhixian Yao, Di Sun, Xin Lin, Xiaoyu Wang, Chaoyong Yang, Jia Song

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Cellular and molecular mechanisms of fibrosis and resolution in bleomycin-induced pulmonary fibrosis mouse model revealed by spatial transcriptome analysis by Qingsong Li, Yue Wang, Liu Ji, Jianhan He, Haixia Liu, Weizhen Xue, Huihui Yue, Ruihan Dong, Xin Liu, Daqing Wang, Huilan Zhang

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Spatial Transcriptome Uncovers the Mouse Lung Architectures and Functions by Yujia Jiang, Yujia Jiang, Shijie Hao, Shijie Hao, Xi Chen, Mengnan Cheng, Mengnan Cheng, Jiangshan Xu, Jiangshan Xu, Chenghao Li, Huiwen Zheng, Huiwen Zheng, Giacomo Volpe, Ao Chen, Sha Liao, Chuanyu Liu, Longqi Liu, Xun Xu, Xun Xu

Subjects: “…spatial transcriptome…”
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Spatiotemporal Molecular Architecture of Lineage Allocation and Cellular Organization in Tooth Morphogenesis by Shengjie Jiang, Yuning Zhang, Huimin Zheng, Kai Zhao, Yue Yang, Binbin Lai, Xuliang Deng, Yan Wei

Subjects: “…spatial transcriptome…”
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Application of spatial transcriptome technologies to neurological diseases by Dongshan Ya, Dongshan Ya, Yingmei Zhang, Yingmei Zhang, Qi Cui, Qi Cui, Yanlin Jiang, Jiaxin Yang, Jiaxin Yang, Ning Tian, Ning Tian, Wenjing Xiang, Xiaohui Lin, Qinghua Li, Qinghua Li, Qinghua Li, Rujia Liao, Rujia Liao, Rujia Liao

Subjects: “…spatial transcriptome…”
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Spatial transcriptomic analysis of tumor microenvironment in esophageal squamous cell carcinoma with HIV infection by Yuanli Zuo, Yang Jin, Gang Li, Yue Ming, Ting Fan, Yitong Pan, Xiaojun Yao, Yong Peng

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SpaCcLink: exploring downstream signaling regulations with graph attention network for systematic inference of spatial cell–cell communication by Jingtao Liu, Litian Ma, Fen Ju, Chenguang Zhao, Liang Yu

Subjects: “…Spatial transcriptome…”
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Combination of spatial transcriptomics analysis and retrospective study reveals liver infection of SARS-COV-2 is associated with clinical outcomes of COVID-19Research in context by Shiqi Chen, Yi Zhang, Asha Ashuo, Shu Song, Lunzhi Yuan, Weixia Wang, Cong Wang, Zunguo Du, Yangtao Wu, Dan Tan, Chenlu Huang, Jingna Chen, Yaming Li, Jinjin Bai, Huilin Guo, Zehong Huang, Yi Guan, Ningshao Xia, Zhenghong Yuan, Jiming Zhang, Quan Yuan, Zhong Fang

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Editorial: Integration of Multi-Omics Techniques in Cancer by Geoffroy Andrieux, Geoffroy Andrieux, Sajib Chakraborty

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Unraveling heterogeneity in transcriptome and its regulation through single-cell multi-omics technologies by Xing, Qiao Rui, Cipta, Nadia Omega, Hamashima, Kiyofumi, Liou, Yih-Cherng, Koh, Cheng-Gee, Loh, Yuin-Han

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Integrative analysis of semaphorins family genes in colorectal cancer: implications for prognosis and immunotherapy by Jiahao Zhu, Benjie Xu, Zhixing Wu, Zhixing Wu, Zhiwei Yu, Shengjun Ji, Jie Lian, Haibo Lu

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Identification of invasive subpopulations using spatial transcriptome analysis in thyroid follicular tumors by Ayana Suzuki, Satoshi Nojima, Shinichiro Tahara, Daisuke Motooka, Masaharu Kohara, Daisuke Okuzaki, Mitsuyoshi Hirokawa, Eiichi Morii

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CVAM: CNA Profile Inference of the Spatial Transcriptome Based on the VGAE and HMM by Jian Ma, Jingjing Guo, Zhiwei Fan, Weiling Zhao, Xiaobo Zhou

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Robust Acquisition of Spatial Transcriptional Programs in Tissues With Immunofluorescence-Guided Laser Capture Microdissection by Xiaodan Zhang, Chuansheng Hu, Chen Huang, Ying Wei, Xiaowei Li, Miaomiao Hu, Hua Li, Ji Wu, Daniel M. Czajkowsky, Yan Guo, Zhifeng Shao

Subjects: “…spatial transcriptome…”
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Integrating single-cell RNA-seq and spatial transcriptomics reveals MDK-NCL dependent immunosuppressive environment in endometrial carcinoma by Xinnian Yu, Linjun Xie, Jianjuan Ge, Huixin Li, Shanliang Zhong, Xiaolin Liu

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Spatial transcriptomes and microbiota reveal immune mechanism that respond to pathogen infection in the posterior intestine of Sebastes schlegelii by Min Cao, Ting Xue, Huijun Huo, Xiaoyan Zhang, Ning Ning Wang, Xu Yan, Chao Li

Subjects: “…spatial transcriptome…”
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Advances in Single-Cell Transcriptome Sequencing and Spatial Transcriptome Sequencing in Plants by Zhuo Lv, Shuaijun Jiang, Shuxin Kong, Xu Zhang, Jiahui Yue, Wanqi Zhao, Long Li, Shuyan Lin

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