Using EuGeneCiD and EuGeneCiM computational tools for synthetic biology by Wheaton L. Schroeder, Anna S. Baber, Rajib Saha

“…Summary: Synthetic biology often relies on the design of genetic circuits, utilizing “bioparts” (modular DNA pieces) to accomplish desired responses to external stimuli. …”
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The whack-a-mole governance challenge for AI-enabled synthetic biology: literature review and emerging frameworks by Trond Arne Undheim, Trond Arne Undheim

“…AI-enabled synthetic biology has tremendous potential but also significantly increases biorisks and brings about a new set of dual use concerns. …”
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SYNBIOCHEM Synthetic Biology Research Centre, Manchester – A UK foundry for fine and speciality chemicals production by Le Feuvre RA, Carbonell P, Currin A, Dunstan M, Fellows D, Jervis AJ, Rattray NJW, Robinson CJ, Swainston N, Vinaixa M, Williams A, Yan C, Barran P, Breitling R, Chen GG, Faulon JL, Goble C, Goodacre R, Kell DB, Micklefield J, Scrutton NS, Shapira P, Takano E, Turner NJ

“…The UK Synthetic Biology Research Centre, SYNBIOCHEM, hosted by the Manchester Institute of Biotechnology at the University of Manchester is delivering innovative technology platforms to facilitate the predictable engineering of microbial bio-factories for fine and speciality chemicals production. …”
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Artificial Small Molecules as Cofactors and Biomacromolecular Building Blocks in Synthetic Biology: Design, Synthesis, Applications, and Challenges by Fenghua Liu, Lingling He, Sheng Dong, Jinsong Xuan, Qiu Cui, Yingang Feng

“…In this review, we summarized research on artificial small molecules including biological metal cluster mimics, coenzyme analogs (mNADs), designer cofactors, non-natural nucleotides (XNAs), and non-natural amino acids (nnAAs), focusing on their design, synthesis, and applications as well as the current challenges in synthetic biology.…”
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Synthetic biology toolkit for engineering Cupriviadus necator H16 as a platform for CO2 valorization by Haojie Pan, Jia Wang, Haoliang Wu, Zhongjian Li, Jiazhang Lian

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Synthetic biology promotes the capture of CO2 to produce fatty acid derivatives in microbial cell factories by Xiaofang Liu, Hangyu Luo, Dayong Yu, Jinyu Tan, Junfa Yuan, Hu Li

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Engineering of gentiopicroside-producing yeast strain using low-energy ion implantation mediated synthetic biology by Ting Wang, Weidong Qian, Yunfang Fu, Changlong Cai, Peihong Mao

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Focus and Insights into the Synthetic Biology-Mediated Chassis of Economically Important Fungi for the Production of High-Value Metabolites by Pragya Tiwari, Laurent Dufossé

“…Substantial progress has been achieved and knowledge gaps addressed in synthetic biology-mediated engineering of biological organisms to produce high-value metabolites. …”
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A low-cost paper-based synthetic biology platform for analyzing gut microbiota and host biomarkers by Melissa K. Takahashi, Xiao Tan, Aaron J. Dy, Dana Braff, Reid T. Akana, Yoshikazu Furuta, Nina Donghia, Ashwin Ananthakrishnan, James J. Collins

“…Here, the authors develop a low-cost, paper-based synthetic biology platform that allows species-specific quantification of bacterial mRNAs and clinically relevant host biomarkers.…”
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Reduced evolvability of <it>Escherichia coli </it>MDS42, an IS-less cellular chassis for molecular and synthetic biology applications by Blattner Frederick R, Pósfai János, Ayaydin Ferhan, Balikó Gabriella, Fehér Tamás, Umenhoffer Kinga, Pósfai György

“…However, newly emerging, evolved features can be undesirable when genetic circuits, designed and fabricated by rational, synthetic biological approaches, are installed in the cell. …”
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A low-cost paper-based synthetic biology platform for analyzing gut microbiota and host biomarkers by Donghia, Nina, Ananthakrishnan, Ashwin, Takahashi, Melissa Kimie, Tan, Xiao, Dy, Aaron James, Braff, Dana, Akana, Reid T., Furuta, Yoshikazu, Collins, James J.

“…Here, we present a synthetic biology platform for affordable, on-demand, and simple analysis of microbiome samples using RNA toehold switch sensors in paper-based, cell-free reactions. …”
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Synthetic biology tools for sensing and evolving microbes: CRISPR-diagnostics and transposon-mediated genome re-wiring by English, Max Atti

“…In this thesis, I re-purpose transposons and their evolutionary descendants as synthetic biology tools for two distinct applications: new platforms for directed genome evolution, and CRISPR-based nucleic acid sensors. …”
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From Genetically Modified Organisms To Synthetic Biology: Legislation in the European Union, in Six Member Countries and in Switzerland by Furger, Franco

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Strategies for designing, testing and demonstrating safety : what synthetic biology can learn from retrospective cases by Yeddanapudi, Neelima, 1976-

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Protocols for Implementing an Escherichia coli Based TX-TL Cell-Free Expression System for Synthetic Biology by Sun, Zachary Z., Hayes, Clarmyra A., Shin, Jonghyeon, Caschera, Filippo, Murray, Richard M., Noireaux, Vincent

“…The resulting system has unique applications in synthetic biology as a prototyping environment, or "TX-TL biomolecular breadboard."…”
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Bridging gaps in synthetic biology oversight : iGEM as a testbed for proactive, adaptive risk management by McNamara, Julie H. (Julie Hutton)

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Multiple overlap extension PCR (MOE-PCR): an effective technical shortcut to high throughput synthetic biology by Kadkhodaei, Saeid, Memari, Hamid Rajabi, Abbasiliasi, Sahar, Rezaei, Morvarid Akhavan, Movahedi, Ali, Tan, Joo Shun, Ariff, Arbakariya

“…We expect the technique to be used as a robust, reliable and fast method in synthetic biology.…”

An estimate is worth about a thousand experiments: using order-of-magnitude estimates to identify cellular engineering targets by Kevin James Metcalf, Marilyn F. Slininger Lee, Christopher Matthew Jakobson, Danielle Tullman-Ercek

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Adaptive evolution of a minimal organism with a synthetic genome by Troy E. Sandberg, Kim S. Wise, Christopher Dalldorf, Richard Szubin, Adam M. Feist, John I. Glass, Bernhard O. Palsson

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Optimization-based Eukaryotic Genetic Circuit Design (EuGeneCiD) and modeling (EuGeneCiM) tools: Computational approach to synthetic biology by Wheaton L. Schroeder, Anna S. Baber, Rajib Saha

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