MetaMeta: integrating metagenome analysis tools to improve taxonomic profiling by Vitor C. Piro, Marcel Matschkowski, Bernhard Y. Renard

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MetaPalette: a <italic toggle="yes">k</italic>-mer Painting Approach for Metagenomic Taxonomic Profiling and Quantification of Novel Strain Variation by David Koslicki, Daniel Falush

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Deciphering Microbial Shifts in the Gut and Lung Microbiomes of COVID-19 Patients by Vaidehi Pusadkar, Anirudh Mazumder, Abhijay Azad, Deepti Patil, Rajeev K. Azad

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Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes by Xi Chen, Xiaole Yin, Xianghui Shi, Weifu Yan, Yu Yang, Lei Liu, Tong Zhang

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UMGAP: the Unipept MetaGenomics Analysis Pipeline by Felix Van der Jeugt, Rien Maertens, Aranka Steyaert, Pieter Verschaffelt, Caroline De Tender, Peter Dawyndt, Bart Mesuere

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Evaluation of computational methods for human microbiome analysis using simulated data by Matthieu J. Miossec, Sandro L. Valenzuela, Marcos Pérez-Losada, W. Evan Johnson, Keith A. Crandall, Eduardo Castro-Nallar

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Effect of the biocontrol strain Bacillus amyloliquefaciens FZB42 on the microbial community in the rhizosphere of lettuce under field conditions analyzed by whole metagenome sequen... by Magdalena Sonja Kröber, Daniel eWibberg, Rita eGrosch, Felix Gregor Eikmeyer, Bart eVerwaijen, Soumitra Paul Chowdhury, Anton eDr. Hartmann, Alfred ePühler, Andreas eSchlüter

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CHAMP delivers accurate taxonomic profiles of the prokaryotes, eukaryotes, and bacteriophages in the human microbiome by Sara Pita, Sara Pita, Pernille Neve Myers, Joachim Johansen, Jakob Russel, Mads Cort Nielsen, Aron C. Eklund, Henrik Bjørn Nielsen

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Benchmarking Metagenomic Classifiers on Simulated Ancient and Modern Metagenomic Data by Vaidehi Pusadkar, Rajeev K. Azad

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SLIMM: species level identification of microorganisms from metagenomes by Temesgen Hailemariam Dadi, Bernhard Y. Renard, Lothar H. Wieler, Torsten Semmler, Knut Reinert

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Metagenomic Insights Into the Taxonomic and Functional Features of Kinema, a Traditional Fermented Soybean Product of Sikkim Himalaya by Jitesh Kumar, Nitish Sharma, Girija Kaushal, Sanjukta Samurailatpam, Dinabandhu Sahoo, Dinabandhu Sahoo, Amit K. Rai, Sudhir P. Singh

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Metagenomics revealing molecular profiling of community structure and metabolic pathways in natural hot springs of the Sikkim Himalaya by Nitish Sharma, Jitesh Kumar, Md. Minhajul Abedin, Dinabandhu Sahoo, Ashok Pandey, Amit K. Rai, Sudhir P. Singh

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Crowdsourced benchmarking of taxonomic metagenome profilers: lessons learned from the sbv IMPROVER Microbiomics challenge by Carine Poussin, Lusine Khachatryan, Nicolas Sierro, Vijay Kumar Narsapuram, Fernando Meyer, Vinay Kaikala, Vandna Chawla, Usha Muppirala, Sunil Kumar, Vincenzo Belcastro, James N. D. Battey, Elena Scotti, Stéphanie Boué, Alice C. McHardy, Manuel C. Peitsch, Nikolai V. Ivanov, Julia Hoeng

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Functional Diversity within Gut Microbiomes: Implications for Conserving Biodiversity by Cameron S. Dodd, Catherine E. Grueber

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Distinctive prokaryotic microbiomes in sympatric plant roots from a Yucatan cenote by Alejandra Escobar-Zepeda, Patricia Rosas-Escobar, Laura Marquez Valdelamar, Patricia de la Torre, Laila P. Partida-Martinez, Ruben Remegaldo, Alejandro Sanchez-Flores, Fredd Vergara

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Can Targeting Non-Contiguous V-Regions With Paired-End Sequencing Improve 16S rRNA-Based Taxonomic Resolution of Microbiomes?: An In Silico Evaluation by Nishal Kumar Pinna, Anirban Dutta, Mohammed Monzoorul Haque, Sharmila S. Mande

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Cultivation-independent genomes greatly expand taxonomic-profiling capabilities of mOTUs across various environments by Hans-Joachim Ruscheweyh, Alessio Milanese, Lucas Paoli, Nicolai Karcher, Quentin Clayssen, Marisa Isabell Keller, Jakob Wirbel, Peer Bork, Daniel R. Mende, Georg Zeller, Shinichi Sunagawa

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Beyond Taxonomic Analysis of Microbiomes: A Functional Approach for Revisiting Microbiome Changes in Colorectal Cancer by Mohammad Hossein Norouzi-Beirami, Sayed-Amir Marashi, Ali Mohammad Banaei-Moghaddam, Kaveh Kavousi

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DISCo-microbe: design of an identifiable synthetic community of microbes by Dana L. Carper, Travis J. Lawrence, Alyssa A. Carrell, Dale A. Pelletier, David J. Weston

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Microbial Diversity and Community Structure of Wastewater-Driven Microalgal Biofilms by Olga Blifernez-Klassen, Julia Hassa, Diana L. Reinecke, Tobias Busche, Viktor Klassen, Olaf Kruse

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