Development and validation of a nomogram for predicting pulmonary complications after video-assisted thoracoscopic surgery in elderly patients with lung cancer by Di Zhao, Anqun Ma, Shuang Li, Jiaming Fan, Tianpei Li, Gongchao Wang, Gongchao Wang

“…Our model can also be accessed using the online web server https://pulmonary-disease-predictor.shinyapps.io/dynnomapp/. …”
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Analysis of circular genome rearrangement by fusions, fissions and block-interchanges by Wang Tsui Ching, Huang Yen Lin, Lu Chin Lung, Chiu Hsien-Tai

“…In addition, we have implemented this algorithm as a web server, called FFBI, and have also applied it to analyzing by gene orders the whole genomes of three human <it>Vibrio </it>pathogens, each with multiple and circular chromosomes, to infer their evolutionary relationships. …”
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An improved DNA-binding hot spot residues prediction method by exploring interfacial neighbor properties by Sijia Zhang, Lihua Wang, Le Zhao, Menglu Li, Mengya Liu, Ke Li, Yannan Bin, Junfeng Xia

“…Moreover, a user-friendly web server for inpPDH is well established and is freely available at http://bioinfo.ahu.edu.cn/inpPDH . …”
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Identification of Platform-Independent Diagnostic Biomarker Panel for Hepatocellular Carcinoma Using Large-Scale Transcriptomics Data by Harpreet Kaur, Harpreet Kaur, Anjali Dhall, Rajesh Kumar, Rajesh Kumar, Gajendra P. S. Raghava

“…Eventually, we developed a web server HCCpred based on the above study to facilitate scientific community (http://webs.iiitd.edu.in/raghava/hccpred/).…”
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Approaching automation of multiple instance orchestration of the menoci web portal by Luca Freckmann, Christian Henke, Robert Kossen, Linus Weber, Ulrich Sax, Sara Y. Nussbeck, Harald Kusch

“…Our developed automation pipelines include updates for web server and database components, as well as the Drupal content management system and other components that together form the menoci platform. …”
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APLIKASI SISTEM MONITORING PERTUMBUHAN TANAMAN BERBASIS WEB MENGGUNAKAN MACHINE VISION Application of Web-based Monitoring System for Plant Growing by Using Machine Vision by Lilik Sutiarso, Atris Suyantohadi, Dody Kastono, Andri Prima Nugroho

“…The analyzed data were stored as MySQL database format in the web server. Final output of the research was the web based monitoring instruments for plant growing that can be accessed through intranet (local area network) as well as internet technology. …”
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Prediction of protein structural classes for low-homology sequences based on predicted secondary structure by Yang, Jian-Yi, Peng, Zhen-Ling, Chen, Xin

“…Comparisons with ten existing methods showed that our method consistently performs better for all the tested datasets and the overall accuracy improvements range from 2.3% to 27.5%. A web server that implements the proposed method is freely available at http://www1.spms.ntu.edu.sg/~chenxin/RKS_PPSC/. …”
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A division-of-labor mode contributes to the cardioprotective potential of mesenchymal stem/stromal cells in heart failure post myocardial infarction by Xicheng Wang, Xicheng Wang, Xicheng Wang, Chao Yang, Chao Yang, Chao Yang, Xiaoxue Ma, Xiaoxue Ma, Xiaoxue Ma, Xiuhua Li, Xiuhua Li, Xiuhua Li, Yiyao Qi, Yiyao Qi, Yiyao Qi, Zhihui Bai, Zhihui Bai, Zhihui Bai, Ying Xu, Ying Xu, Ying Xu, Keming Ma, Keming Ma, Keming Ma, Yi Luo, Yi Luo, Yi Luo, Jiyang Song, Jiyang Song, Jiyang Song, Wenwen Jia, Wenwen Jia, Wenwen Jia, Zhiying He, Zhiying He, Zhiying He, Zhongmin Liu, Zhongmin Liu, Zhongmin Liu

“…Shinyapp and shinycell workflows were used for deploying web-server.Result3D GMP-grade MSCs can significantly and stably reduce the extent of post-MI HF. …”
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Development of blood hemoglobin level early detection device based on a noninvasive optical platform by Irzaman, Yaya Suryana, Sabar Pambudi, Tika Widayanti, Renan Prasta Jenie, Bayu Prastowo, Nazopatul Patonah Har, Vania Rahmawaty, Muhammad Dahrul, Aminullah, Ade Kurniawan, Ridwan Siskandar, Ichsan Hardyanto, Johan Iskandar, Naufal Muharram Nurdin, Arga Ardidarma, Sri Kristiana Rahayu, Husin Alatas

“…Three sets of device prototype variants were successfully developed: (i) the noninvasive blood hemoglobin level measuring device based on Raspberry Pi Prototype on Infant Finger and Thigh Probes, (ii) the level measuring prototype noninvasive hemoglobin in blood based on Internet of Things and WebServer, and (iii) the prototype of noninvasive blood hemoglobin level measuring device on in vitro probe with reflectance method. …”
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Development and validation of anti-human Alpha synuclein DNA aptamer using computer modelling techniques—an in silico study by Marcus Rock, Georgios D. Zouganelis, Ana Flavia Belchior de Andrade, Samantha J. Drake, Athanasios Alexiou, Ashraf Albrakati, Gaber El-Saber Batiha, Thomas Arron Illingworth

“…Methods: A Python script random generated library of DNA sequences were screened based on their thermodynamic stability with the use of DINAMelt server-QuickFold web server. The selected sequences were examined with MFold in order to generate secondary structure data that were used to produce 3D data with the use of RNA composer software. …”
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m6A Reader: Epitranscriptome Target Prediction and Functional Characterization of N6-Methyladenosine (m6A) Readers by Di Zhen, Yuxuan Wu, Yuxin Zhang, Kunqi Chen, Kunqi Chen, Bowen Song, Bowen Song, Haiqi Xu, Yujiao Tang, Yujiao Tang, Zhen Wei, Zhen Wei, Jia Meng, Jia Meng, Jia Meng

“…Additionally, the distinct biological characteristics of each individual m6A reader were explored via the distribution, conservation, Gene Ontology enrichment, cellular components and molecular functions of their target m6A sites. A web server was constructed for predicting the putative binding readers of m6A sites to serve the research community, and is freely accessible at: http://m6areader.rnamd.com.…”
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Exploring the role of miR-200 family in regulating CX3CR1 and CXCR1 in lung adenocarcinoma tumor microenvironment: implications for therapeutic intervention by Archana Sharma, Prithvi Singh, Rishabh Jha, Saleh A. Almatroodi, Faris Alrumaihi, Arshad Husain Rahmani, Hajed Obaid Alharbi, Ravins Dohare, Mansoor Ali Syed

“…These DEIRGs were validated using the human protein atlas (HPA) web server. Further, we validated the regulatory role of hsa-miR-200a-3p in an in-vitro indirect co-culture model using conditioned media from M0, M1 and M2 polarized macrophages (THP-1) and LUAD cell lines (A549 and H1299 cells). …”
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Evaluation of the Anti-Diabetic Activity of Some Common Herbs and Spices: Providing New Insights with Inverse Virtual Screening by Andreia S.P. Pereira, Antonio J. Banegas-Luna, Jorge Peña-García, Horacio Pérez-Sánchez, Zeno Apostolides

“…In this study, a library of over 2300 compounds derived from 30 common herbs and spices were screened in silico with the DIA-DB web server against 18 known diabetes drug targets. Over 900 compounds from the herbs and spices library were observed to have potential anti-diabetic activity and liquorice, hops, fennel, rosemary, and fenugreek were observed to be particularly enriched with potential anti-diabetic compounds. …”
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Structural and functional dissection of differentially expressed tomato WRKY transcripts in host defense response against the vascular wilt pathogen (Fusarium oxysporum f. sp. lyco... by Mohd Aamir, Vinay Kumar Singh, Manish Kumar Dubey, Sarvesh Pratap Kashyap, Andleeb Zehra, Ram Sanmukh Upadhyay, Surendra Singh

“…The STRING results were further validated through Predicted Tomato Interactome Resource (PTIR) database. The CELLO2GO web server revealed the functional gene ontology annotation and protein subcellular localization, which predicted that SolyWRKY33 is involved in amelioration of biological stress (39.3%) and other metabolic processes (39.3%). …”
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Pivotal interplays between fecal metabolome and gut microbiome reveal functional signatures in cerebral ischemic stroke by Lanlan Zhao, Cheng Wang, Shanxin Peng, Xiaosong Zhu, Ziyi Zhang, Yanyan Zhao, Jinling Zhang, Guoping Zhao, Tao Zhang, Xueyuan Heng, Lei Zhang

“…We also provide a user-friendly web server and a R package to facilitate researchers to conduct the association analysis of gut microbiome and metabolomics.…”
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Antimicrobial peptide moricin induces ROS mediated caspase-dependent apoptosis in human triple-negative breast cancer via suppression of notch pathway by Imran Ahmad, Saurabh Pal, Ranjana Singh, Khursheed Ahmad, Nilanjan Dey, Aditi Srivastava, Rumana Ahmad, Muath Suliman, Mohammad Y. Alshahrani, Md. Abul Barkat, Sahabjada Siddiqui

“…Molecular docking was performed to predict the binding interaction between moricin and peptide-related cancer signaling pathway(s) through the HawkDOCK web server. Further, in vitro anticancer activity of moricin was performed against MDA-MB-231 cells. …”
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Users Engage More with Interface than Materials at Welsh Newspapers Online Website by Kathleen Reed

“…Design – Analysis of Google Analytics and web server content logs. Setting – Welsh Newspapers Online website: http://newspapers.library.wales Subjects – WNO had 19,805 unique visitors from 12 March 2013 to 30 June 2013, who made 52,767 visits to the site. …”
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Better binding informatics of delta variants (B.1.617.2) with ACE2 than wild, D614G or N501Y CoV-2 is fully blocked by 84 amino-acid cut of wild spike by Dipannita Santra, Amrita Banerjee, Smarajit Maiti

“…A different combination of spike-ACE2 binding 1:1 or competitive blind-docking was performed using the Haddock 2.4 web-server. Eventually, two cut-segments (84 amino-acid of wild-spike, 432–516 Cut1) and its mutant T500S; Cut 2 were screened (Swiss-model Expasy-server) as blocker/inhibitor of all spike-variants (PyMOL-V2.2.2). …”
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Use of a Web-Based Physical Activity Record System to Analyze Behavior in a Large Population: Cross-Sectional Study by Namba, Hideyuki, Yamada, Yosuke, Ishida, Mika, Takase, Hideto, Kimura, Misaka

“…Participant responses expressed the intensity of each activity at 15-minute increments and were recorded on a Web server. Residential areas were compared and multiple regression analysis was performed. …”
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In-Silico Characterization of Estrogen Reactivating β-Glucuronidase Enzyme in GIT Associated Microbiota of Normal Human and Breast Cancer Patients by Fatima Muccee, Shakira Ghazanfar, Wajya Ajmal, Majid Al-Zahrani

“…Protein sequences of enzymes retrieved from UniProt database were subjected to ProtParam, CELLO2GO, SOPMA (secondary structure prediction method), PDBsum (Protein Database summaries), PHYRE2 (Protein Homology/AnalogY Recognition Engine), SAVES v6.0 (Structure Validation Server), MEME version 5.4.1 (Multiple Em for Motif Elicitation), Caver Web server v 1.1, Interproscan and Predicted Antigenic Peptides tool. …”
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