Security in internet of things design by Ricardy, Bob

“…When such devices are connected to the same network, they become known as “things” and form an Internet of Things, which are a network of objects such as embedded computers, smart devices, sensors with the ability to communicate and exchange data with other services and/or devices [2] in addition, these IoT devices are now also being connected to the internet, such that they can send their data to web servers and cloud data centres for further analysis. …”
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Investigation of Experimental and In Silico Physicochemical Propertiesof Thiazole-Pyridinium Anti-Acetylcholinesterase Derivatives withPotential Anti-Alzheimer’s Activity by Golaleh Ghotbi, Maryam Hamzeh-Mivehroud, Arezou Taghvimi, Soodabeh Davaran, Siavoush Dastmalchi

“…Different druglikeness properties of the compounds were alsocalculated using available software and web-servers. Results: The experimentally determined logarithm of partition coefficients (log P) for thestudied compounds were in the range of -1.00 to -0.38. …”
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AP001056.1, A Prognosis-Related Enhancer RNA in Squamous Cell Carcinoma of the Head and Neck by Xiaolian Gu, Lixiao Wang, Linda Boldrup, Philip J. Coates, Robin Fahraeus, Nicola Sgaramella, Torben Wilms, Karin Nylander

“…Tissue-specific enhancer-derived RNAs and their regulated genes previously predicted using the computational pipeline PreSTIGE, were considered as putative eRNA-target pairs. The interactive web servers, TANRIC (the Atlas of Noncoding RNAs in Cancer) and cBioPortal, were used to explore the RNA levels and clinical data from the Cancer Genome Atlas (TCGA) project. …”
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Wnt/β‐catenin signaling pathway inhibitors, glycyrrhizic acid, solanine, polyphyllin I, crocin, hypericin, tubeimoside‐1, diosmin, and rutin in medicinal plants have better binding... by Chukwuebuka Egbuna, Kingsley C. Patrick‐Iwuanyanwu, Eugene N. Onyeike, Chukwuemelie Zedech Uche, Uchenna Petronilla Ogoke, Muhammad Riaz, Ebube Nnamdi Ibezim, Johra Khan, Kamoru A. Adedokun, Sikiru O. Imodoye, Ibrahim O. Bello, Chinaza Godswill Awuchi

“…The ADMET properties of the best‐performing compounds were calculated using SwissADME and pkCMS web servers. The results obtained from the molecular docking study showed that glycyrrhizic acid, solanine, polyphyllin I, crocin, hypericin, tubeimoside‐1, diosmin, and rutin had the best binding interactions with β‐catenin protein based on their binding affinities. …”
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A novel web-based dynamic prognostic nomogram for gastric signet ring cell carcinoma: a multicenter population-based study by Yujuan Jiang, Haitao Hu, Xinxin Shao, Weikun Li, Yiming Lu, Jianwei Liang, Yantao Tian

“…The models were internally validated in the training cohort and externally validated in the validation cohort. Two web servers were created to make the nomogram easier to use.ResultsPatients with GSRCC were divided into training (n = 2938) and validation (n = 1260) cohorts. …”
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MiR-373 Suppresses Cell Proliferation And Apoptosis Via Regulation Of SIRT1/PGC-1α/NRF2 Axis In Pancreatic Cancer by Maryam Heydari, Zohreh Hojati, Moein Dehbashi

“…Materials and Methods: In this case and control study, to get the gene targets related to these two miRNAs, TargetScan, miRTargetLink Human and mirDIP web servers were applied. In addition, gene networks and gene ontology enrichment analysis were performed by STRING 10.5, KEGG and ShinyGO v0.41. …”
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In silico ADME-T and molecular docking study of phytoconstituents from Tithonia diversifolia (Hemsl.) A. Gray on various targets of diabetic nephropathy by Oktavia Rahayu Adianingsih, Uswatun Khasanah, Kevin Diagonsa Anandhy, Valentina Yurina

“…ADME-T properties were predicted using three different web servers. Results: Drug-likeness analysis showed that all the phytoconstituents were within the range set by Lipinski’s rule of five. …”
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Novel Phthalazin-1(2H)-One Derivatives Displaying a Dithiocarbamate Moiety as Potential Anticancer Agents by Noemí Vila, Pedro Besada, José Brea, María Isabel Loza, Carmen Terán

“…The drug-likeness and toxicity properties of the novel phthalazinone-dithiocarbamate hybrids were predicted using Swiss-ADME and ProTox web servers, respectively.…”
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UCRF: static analyzing firmware to generate under-constrained seed for fuzzing SOHO router by Qin, Chuan, Peng, Jiaqian, Liu, Puzhuo, Zheng, Yaowen, Cheng, Kai, Zhang, Weidong, Sun, Limin

“…Numerous vulnerabilities are introduced in the process that web servers receive and handle external data directly. …”
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In silico analysis of mutation spectrum of Ehlers–Danlos, osteogenesis imperfecta, and cutis laxa overlapping phenotypes in Iranian population by Teymoor Khosravi, Karim Naghipoor, Fatemeh Vaghefi, Ali Mohammad Falahati, Morteza Oladnabi

“…Pathogenicity of EDS, OI, and CL variants in Iranian patients was evaluated using Web servers. A protein interaction network was created by String database and visualized using a Python-based library. …”
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Aminoacyl tRNA synthetases as potential drug targets of the Panthera pathogen Babesia by Jyoti Chhibber-Goel, Sarthak Joshi, Amit Sharma

“…The sequences were analysed and their subcellular localizations were predicted using Target P1.1, SignalP 3.0, TMHMM v.2.0 and Deeploc 1.0 web servers. Structure-based analysis of the aaRSs from P. tigris and its protozoan pathogens Babesia spp. was performed using Phyre2 and chimera. …”
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Automated Network Incident Identification through Genetic Algorithm-Driven Feature Selection by Ahmet Aksoy, Luis Valle, Gorkem Kar

“…These malicious tactics are designed to disrupt critical services by overwhelming web servers with malicious requests. In contrast to DoS attacks, there exists nefarious Operating System (OS) scanning, which exploits vulnerabilities in target systems. …”
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Molecular Design and In-Silico Analysis of Trisubstituted Benzimidazole Derivatives as Ftsz Inhibitor by Shankar Thapa, Shachindra L. Nargund, Mahalakshmi Suresha Biradar

“…The drug-likeliness properties and toxicity of ligands were predicted from SwissADMET and ToxiM web servers, respectively. Compound A15 (2,3,5,6-tetrafluoro-N1-{6-fluoro-5-[4-(1H-imidazole-1-yl) phenoxy]-1H-1,3-benzodiazol-2-yl} benzene-1,4-diamine) showed the best binding energy (ΔG = −10.2 kcal/mol/) along with four hydrogen bond interactions (GLY107, PHE180, ASP 184). …”
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P2Rank: machine learning based tool for rapid and accurate prediction of ligand binding sites from protein structure by Radoslav Krivák, David Hoksza

“…These use cases require stability and speed, which disqualifies many of the recently introduced tools that are either template based or available only as web servers. Results We present P2Rank, a stand-alone template-free tool for prediction of ligand binding sites based on machine learning. …”
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WellInverter: a web application for the analysis of fluorescent reporter gene data by Yannick Martin, Michel Page, Christophe Blanchet, Hidde de Jong

“…Conclusions The new version of WellInverter is a robust, easy-to-use and scalable web application, which has been deployed on two publicly accessible web servers and which can also be installed locally. …”
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Identifying potential natural inhibitors of Brucella melitensis Methionyl-tRNA synthetase through an in-silico approach. by Adekunle Babajide Rowaiye, Akwoba Joseph Ogugua, Gordon Ibeanu, Doofan Bur, Mercy Titilayo Asala, Osaretin Benjamin Ogbeide, Emmanuella Oshiorenimeh Abraham, Hamzah Bundu Usman

“…Screening of the molecular descriptors of the compounds for bioavailability, pharmacokinetic properties, and bioactivity was performed using the SWISSADME, pkCSM, and Molinspiration web servers respectively. The Fpocket and PLIP webservers were used to perform the analyses of the binding pockets and the protein ligand interactions. …”
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Exploring Dark Web Crawlers: A Systematic Literature Review of Dark Web Crawlers and Their Implementation by Jesper Bergman, Oliver B. Popov

“…The capability of automatically harvesting web content from web servers enables LEAs to collect and preserve data prone to serve as potential leads, clues, or evidence in an investigation. …”
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SEQUENCE ANALYSIS OF HOT SPOT REGIONS OF SPIKE AND RNA‑DEPENDENT‑RNA POLYMERASE (RDRP) GENES OF SARS-COV-2 IN KERMAN, IRAN by Nasir, Ramin, Amin, Jamal

“…Clustal OMEGA, MEGA 11 software, I-mutant tools, and SWISS-MODEL and HDOCK web servers were used for bioinformatics analyses.   …”
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The spatial glaciological data infrastructure by T. Y. Khromova, A. A. Medvedev

“…The objects of integration in our study are the information resources of glaciology, accumulated in a distributed system of data on the IGRAS web servers and geoportals in forms of data and metadata bases, structured (in a particular format) data files, object data files (plain text, documents, images, etc.), and electronic atlases. …”
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Versión en español del software gratuito OxMaR para minimización y aleatorización de estudios clínicos by Salvador Guillaumes, Christopher A. O’Callaghan

“…The system has been modified to work on low cost shared web servers and also to allow the concealment of the randomization sequence. …”
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