METHimpute: imputation-guided construction of complete methylomes from WGBS data by Aaron Taudt, David Roquis, Amaryllis Vidalis, René Wardenaar, Frank Johannes, Maria Colomé-Tatché

Subjects: Get full text

The evolution of CHROMOMETHYLASES and gene body DNA methylation in plants by Adam J. Bewick, Chad E. Niederhuth, Lexiang Ji, Nicholas A. Rohr, Patrick T. Griffin, Jim Leebens-Mack, Robert J. Schmitz

Subjects: Get full text

Benchmarking DNA methylation analysis of 14 alignment algorithms for whole genome bisulfite sequencing in mammals by Wentao Gong, Xiangchun Pan, Dantong Xu, Guanyu Ji, Yifei Wang, Yuhan Tian, Jiali Cai, Jiaqi Li, Zhe Zhang, Xiaolong Yuan

Subjects: Get full text

Pregnancy induced hypertension and umbilical cord blood DNA methylation in newborns: an epigenome-wide DNA methylation study by Xiaojun Zhu, Peiyue Jiang, Xia Ying, Xueling Tang, Youcai Deng, Xinghong Gao, Xiaofu Yang

Subjects: Get full text

A comparison of existing global DNA methylation assays to low-coverage whole-genome bisulfite sequencing for epidemiological studies by Florence K. Crary-Dooley, Mitchell E. Tam, Keith W. Dunaway, Irva Hertz-Picciotto, Rebecca J. Schmidt, Janine M. LaSalle

Subjects: Get full text

Evidence Suggesting Absence of Mitochondrial DNA Methylation by Mie Mechta, Lars R. Ingerslev, Odile Fabre, Martin Picard, Romain Barrès

Subjects: Get full text

msPIPE: a pipeline for the analysis and visualization of whole-genome bisulfite sequencing data by Heesun Kim, Mikang Sim, Nayoung Park, Kisang Kwon, Junyoung Kim, Jaebum Kim

Subjects: Get full text

Whole-genome DNA methylation profiling reveals epigenetic signatures in developing muscle in Tan and Hu sheep and their offspring by Caijuan Yue, Caijuan Yue, Jiakang Wang, Yifei Shen, Junli Zhang, Jian Liu, Aiping Xiao, Yisha Liu, Hehua Eer, Qiao-e Zhang

Subjects: Get full text

Characterizing the dynamic and functional DNA methylation landscape in the developing human cortex by Kira A. Perzel Mandell, Amanda J. Price, Richard Wilton, Leonardo Collado-Torres, Ran Tao, Nicholas J. Eagles, Alexander S. Szalay, Thomas M. Hyde, Daniel R. Weinberger, Joel E. Kleinman, Andrew E. Jaffe

Subjects: Get full text

MethylStar: A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing data by Yadollah Shahryary, Rashmi R. Hazarika, Frank Johannes

Subjects: Get full text

HOME: a histogram based machine learning approach for effective identification of differentially methylated regions by Akanksha Srivastava, Yuliya V. Karpievitch, Steven R. Eichten, Justin O. Borevitz, Ryan Lister

Subjects: “…Whole genome bisulfite sequencing…”
Get full text

Reprogramming of DNA methylation and changes of gene expression in grafted Hevea brasiliensis by Hui-Liang Li, Hui-Liang Li, Hui-Liang Li, Ying Wang, Dong Guo, Dong Guo, Jia-Hong Zhu, Jia-Hong Zhu, Yu Wang, Yu Wang, Yu Wang, Hao-Fu Dai, Shi-Qing Peng

Subjects: Get full text

Analyses of methylomes of upland and lowland switchgrass (Panicum virgatum) ecotypes using MeDIP-seq and BS-seq by Mollee Dworkin, Shaojun Xie, Malay Saha, Jyothi Thimmapuram, Venu (Kal) Kalavacharla

Subjects: Get full text

Overexpression of the heterochromatinization factor BAHD1 in HEK293 cells differentially reshapes the DNA methylome on autosomes and X chromosome. by Emanuele eLibertini, Emanuele eLibertini, Alice eLebreton, Alice eLebreton, Alice eLebreton, Alice eLebreton, Goran eLakisic, Goran eLakisic, Goran eLakisic, Goran eLakisic, Goran eLakisic, Marie-Agnès eDillies, Stephan eBeck, Jean-Yves eCoppée, Pascale eCossart, Pascale eCossart, Pascale eCossart, Hélène eBierne, Hélène eBierne, Hélène eBierne, Hélène eBierne, Hélène eBierne

Subjects: Get full text

Genome-wide DNA methylation and transcriptome analyses reveal the key gene for wool type variation in sheep by Jiankui Wang, Guoying Hua, Ganxian Cai, Yuhao Ma, Xue Yang, Letian Zhang, Rui Li, Jianbin Liu, Qing Ma, Keliang Wu, Yaofeng Zhao, Xuemei Deng

Subjects: Get full text

BoostMe accurately predicts DNA methylation values in whole-genome bisulfite sequencing of multiple human tissues by Luli S. Zou, Michael R. Erdos, D. Leland Taylor, Peter S. Chines, Arushi Varshney, The McDonnell Genome Institute, Stephen C. J. Parker, Francis S. Collins, John P. Didion

Subjects: Get full text

Analysis of the Epigenome in Multiplex Pre-eclampsia Families Identifies SORD, DGKI, and ICA1 as Novel Candidate Risk Genes by Amir Ariff, Amir Ariff, Phillip E. Melton, Phillip E. Melton, Shaun P. Brennecke, Shaun P. Brennecke, Eric K. Moses, Eric K. Moses, Eric K. Moses

Subjects: Get full text

Genome-wide DNA Methylation analysis in response to salinity in the model plant caliph medic (Medicago truncatula) by Mahmoud W. Yaish, Abbas Al-Lawati, Ibtisam Al-Harrasi, Himanshu Vishwas Patankar

Subjects: Get full text

Whole genome bisulfite sequencing reveals DNA methylation roles in the adaptive response of wildness training giant pandas to wild environment by Xiaodie Jie, Honglin Wu, Miao Yang, Ming He, Guangqing Zhao, Shanshan Ling, Yan Huang, Bisong Yue, Nan Yang, Xiuyue Zhang, Xiuyue Zhang

Subjects: Get full text

Annelid methylomes reveal ancestral developmental and aging-associated epigenetic erosion across Bilateria by Kero Guynes, Luke A. Sarre, Allan M. Carrillo-Baltodano, Billie E. Davies, Lan Xu, Yan Liang, Francisco M. Martín-Zamora, Paul J. Hurd, Alex de Mendoza, José M. Martín-Durán

Subjects: Get full text