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41
Elucidating the mechanism of mRNA transport using novel imaging technologies
Published 2023“…The MS2-MCP system is used to insert into mRNAs of interest special structures to which RNA-binding proteins, fused to a fluorescent protein such as GFP, can then bind. …”
Thesis -
42
Surface plasmon resonance (SPR) enhanced biosensors
Published 2016“…The point-of care device based on grating Au film for the detection of endotoxin (lipopolysaccharide, LPS) was demonstrated, which displayed excellent portability and good sensitivity. …”
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Thesis -
43
Membrane reconstitution of monoamine oxidase enzymes on supported lipid bilayers
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Journal Article -
44
Unconventional split aptamers cleaved at functionally essential sites preserve biorecognition capability
Published 2021“…An allosteric binding mechanism of BPSPAs, in which a new binding pocket is formed upon the target binding, is revealed by all-atom microsecond-scale molecular dynamics simulations. …”
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Journal Article -
45
Part I Targeting RNA duplexes with modified triplex-forming oligonucleotides Part II Allostery within a Watson-Crick RNA duplex and its application in studying RNA recognition by R...
Published 2014“…Here, we incorporated Locked Nucleic Acid (LNA), 2-thio U, and 2′-O methyl modified residues in a series of all pyrimidine RNA TFOs, and studied the binding to two RNA hairpin structures. 12-Base-triple major-groove pyrimidine•purine-pyrimidine triplex structures form between the RNA/DNA hairpins and the complementary RNA TFOs. …”
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Thesis -
46
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47
CETSA screening identifies known and novel thymidylate synthase inhibitors and slow intracellular activation of 5-fluorouracil
Published 2018“…Assessment of compound binding to native target proteins in live cells is therefore highly desirable in all stages of drug discovery. …”
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Journal Article -
48
Macrobrachium rosenbergii De Man nodavirus recombinant capsid protein production and its interactions with RNA
Published 2015“…Studies on the other members of the Nodaviridae family revealed that the RNA binding site is important for virus assembly and removal of this region inhibits the virus maturation. …”
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Thesis -
49
Methyl and dimethyl o-xylenyl-substituted fullerene acceptors for polymer solar cells
Published 2015“…These values correlate with the binding affinities of the fluorophore and quencher. …”
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Journal Article -
50
Synthesis and application of peptidoglycan oligomers as metabolic labeling agents for bacteria
Published 2020“…Using super-resolution STED confocal microscopy, PGO-rhodamine were found to be localized into the cell walls of all bacterial strains tested. Furthermore, the PGO-rhodamine was not taken up or incorporated into mammalian cells at all, thus confirming that PGOs can be a powerful tool for pan-bacteria-specific labeling and imaging. …”
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Thesis-Doctor of Philosophy -
51
In silico screening of sugar alcohol compounds to inhibit viral matrix protein VP40 of Ebola virus
Published 2021Get full text
Journal Article -
52
Structure and functions of a metallo-beta-lactamase- like hypothetical protein bleg1_2437 from alkali-tolerant soil bacterium Bacillus lehensis G1
Published 2015“…Although MBL is not ubiquitously found in all pathogenic bacteria, its presence is a public health concern. …”
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Thesis -
53
Effects of doping concentration on bond length and bond energy studied by Raman shift
Published 2023“…Numerical reproduction of the measurements clarified that the host atom phonons involved interaction with all of its z neighbors, whereas the doping atom phonon only involved interaction with a dimer. …”
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Journal Article -
54
Discovery of glucose-specific, peptide-based carbohydrate mimics using phage displayed random peptide libraries.
Published 2009“…As part of a larger project to establish general rules for peptide and peptidomimetic-based sugar mimicry, we have screened two phage display libraries (“C-X7-C” and “X12”) against a series of three glucose-binding plant lectins: Concanavalin A (Con A), Pisum Sativum Agglutinin (PSA), and Lens Culinaris Agglutinin (LCA), so as to discover ligands that bind ALL THREE lectins and therefore could act as true functional sugar mimics. …”
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Thesis -
55
Computational screening of FDA-approved hepatitis c drugs for inhibition of VEGFR2 in liver cancer
Published 2024“…Compared to the control compound, two FDA-approved HCV drugs (DB09102 and DB09027) were selected based on their binding energies and interactions with the target protein, which showed comparable binding energies. …”
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Article -
56
HLA-DQB1*05 subtypes and not DRB1*10:01 mediates risk in anti-IgLON5 disease
Published 2024“…The functional relevance of the observed HLA-DQ molecules was studied with competition binding assays. These proof-of-concept experiments revealed preferential binding of IgLON5 in a post-translationally modified, but not native, state to all three risk-associated HLA-DQ receptors. …”
Journal article -
57
Screening for pathogenic neuronal autoantibodies in serum and CSF of patients with first-episode psychosis
Published 2021“…These identified 3/71 (4%) patient sera with weak binding to either contactin-associated protein-like 2, the NMDAR or glycine receptor versus no binding from 48 control samples (p = 0.28, Fisher's test). …”
Journal article -
58
Using an ER-specific optogenetic mechanostimulator to understand the mechanosensitivity of the endoplasmic reticulum
Published 2024“…Sustained mechanostimuli increase the levels of binding-immunoglobulin protein (BiP) expression and phosphorylated eIF2α, two markers for ER stress. …”
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Journal Article -
59
Polar curved polycyclic aromatic hydrocarbons in soot formation
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Journal Article -
60
Structural insights into polyamine spermidine uptake by the ABC transporter PotD-PotABC
Published 2024“…Polyamines, characterized by their polycationic nature, are ubiquitously present in all organisms and play numerous cellular functions. …”
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Journal Article