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1
Crystallographic details of the nucleotide-binding pocket of subunit A and B of A-ATP synthases and insight into the nucleotide-binding subunit α of the Escherichia coli F-ATP synt...
Published 2011“…A region that is critical for nucleotide binding in the A- and B-subunit of A-ATP synthases is the loop called as P-loop (phosphate-binding loop). …”
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Thesis -
2
Correlative light and electron microscopy of telomeric repeat-binding factor 1 in mammalian cells
Published 2019“…Telomeric chromatin consists of ‘TTAGGG’ DNA repeats sequences, nucleosomes and specific telomere-binding proteins called “shelterin”. Shelterin is a six-protein complex that is essential for genome stability. …”
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Thesis -
3
Regulation of mRNA abundance by polypyrimidine tract-binding protein-controlled alternate 5′ splice site choice
Published 2014“…Here we report that polypyrimidine tract-binding protein 1 (Ptbp1/PTB/hnRNP-I) controls alternate 5′ and 3′ splice site (5′ss and 3′ss) usage in a large set of mammalian transcripts. …”
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Journal Article -
4
Resonance modes of tall plasmonic nanostructures and their applications for biosensing
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Journal Article -
5
Structural studies of PfEMP1 bound to human cluster of differentiation 36 and of an unusual human antibody
Published 2017“…<p>In <em>Plasmodium falciparum</em>-infected humans, parasites escape from splenic clearance and cause severe or chronic symptoms partly through the action of the variable surface antigens expressed on the surfaces of infected erythrocytes, called <em>P. falciparum</em> erythrocyte membrane protein 1 (<em>Pf</em>EMP1). …”
Thesis -
6
Narrowing the gap between machine learning scoring functions and free energy perturbation using augmented data
Published 2025“…Machine learning offers great promise for fast and accurate binding affinity predictions. However, current models lack robust evaluation and fail on tasks encountered in (hit-to-) lead optimisation, such as ranking the binding affinity of a congeneric series of ligands, thereby limiting their application in drug discovery. …”
Journal article -
7
Hodge theory and its applications to molecular data analysis
Published 2022“…Nevertheless, there are currently many methods to call TADs, all of which are not based on a rigorous topological mathematical model. …”
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Thesis-Doctor of Philosophy -
8
Conformational landscape of the epidermal growth factor receptor kinase reveals a mutant specific allosteric pocket
Published 2018“…[Nature, 2016, 534, 129–132] reported a small molecule inhibitor (called EAI045) that binds at an allosteric pocket, does not compete with ATP and displays high potency and selectivity towards certain activating mutants (L858R, T790M, L858R/T790M) of EGFR, with IC50 values ranging from 3 nM to 49 nM. …”
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Journal Article -
9
Structural and mechanistic insights into the Rel protein of Mycobacterium tuberculosis
Published 2020“…The NMR spectroscopy titration experiments with branched chain amino acids revealed the specific binding of valine to the MtRel ACT and showed structural rearrangement upon valine binding. …”
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Thesis-Doctor of Philosophy -
10
Targeting NAPE-PLD: assessing its potential in the fight against malaria
Published 2024“…Malaria remains a major global challenge with increasing artemisinin-resistant Plasmodium falciparum. This calls for an increased need for discovering novel ring-stage drug targets. …”
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Final Year Project (FYP) -
11
Structure and protein recognition of G-quadruplexes
Published 2023“…G-rich oligonucleotides can adopt non-canonical secondary structures called G-quadruplexes (G4s) which are biologically relevant and found in applications and nanotechnology. …”
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Thesis-Doctor of Philosophy -
12
The Mark of Cain: The crime of terrorism in times of armed conflict as interpreted by the Court of Appeal of England and Wales in R v. Mohammed Gul
Published 2013“…On 22 February 2012, the Court of Appeal of England and Wales was called on to interpret the definition of the crime of terrorism as contained in relevant United Kingdom (UK) legislation. …”
Journal article -
13
Identification of RNA-Tis11b complexes in activated B cells.
Published 2010“…A type of RBPs, called 12-O-tetradecanoylphorbol-13-acetate (TPA) inducible sequence (TIS11) family members (Tis11, Tis11b and Tis11d), can bind to AU-rich elements (AREs) in 3’-untranslated region (3’ UTR) of mRNAs. …”
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Final Year Project (FYP) -
14
Investigating viral glycosylation pathways for drug and vaccine development
Published 2021“…Compounds of a global anti-COVID-19 effort called the “Moonshot project” targeting the main protease of SARS-CoV-2 were also screened and promising compounds were progressed further to produce a specific direct-acting SARS-CoV-2 antiviral compound. …”
Thesis -
15
YAP-DKK1 axis restricts regeneration to the isthmus of the human gastric glands
Published 2024“…</p> <p>The human stomach is organised into epithelial invaginations called gastric glands. While tissue damage can trigger regeneration at the gland base, in healthy conditions, stem cell activity is restricted to an anatomical niche called the isthmus. …”
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16
Investigating cofactor transfer for a B₁₂-dependent enzyme
Published 2024“…MCM relies on two other proteins, a G-protein metallochaperone called methylmalonic aciduria type A protein (MMAA) and a protein called adenosyltransferase (ATR), to load and off-load cofactor. …”
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Thesis -
17
Co-translational integration of the light harvesting complex II and its associated pigments into polymeric membranes
Published 2016“…Fluorescence measurements of purified proteopolymersomes indicate successful binding of pigments to the proteins within this new environment. …”
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Thesis -
18
Part I : Peptide functionalized materials for gram-negative bacteria targeted PDT and LPS sensing. Part II : Small peptide and membrane lipid based self-assembled nanostructures fo...
Published 2014“…Generally, Gram-negative bacterial pathogens have additional outer membranes mainly composed of highly conserved and unique lipopolysaccharide (LPS) molecules, which serve as permeability barriers to prevent the cell bodies from toxic antimicrobial molecules1-2 including many photosensitizers, which have been successfully used in photoinactivation of Gram-positive strains.3-4 Furthermore, LPS, a potent inducer to human innate immune systems, hence called endotoxin, is now primarily responsible for sepsis associated with the infections of Gram-negative pethogens.5-6 Therefore, the most promising strategy is use of LPS neutralizing peptide as the binding ligand to deliver antibacterial agents meanwhile minimize the side effects.7 The first objective of the research in part I is the design and synthesis of photosensitizer-peptide conjugates for multivalent targeted cellular imaging and photodynamic inactivation (PDI) against Gram-negative bacterial strains. …”
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Thesis -
19
An epigenetic analysis of planarian stem cells
Published 2018“…<p>Planarian flatworms possess somatic pluripotent stem cells, called neoblasts (NBs), which are able to differentiate into all cell types that constitute the adult body plan. …”
Thesis -
20
The structure of hadrons and other potential phases of QCD
Published 2024“…Quantum chromodynamics (QCD) is a mathematical theory describing subatomic particles called quarks and gluons, and the strong force that binds them together into protons and neutrons. …”
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Thesis