Segmentation of cell clumps for quantitative analysis by Li, S

“…The increasing amounts of microscopy data generated in cell biology requires the development of automated tools for the quantitative analysis of images. …”

Bayesian modeling of cell neighborhoods from ClumpSeq data by Demian, AS

“…</p> <p>The focus of this thesis is computational and centered on developing deep learning models for analyzing ClumpSeq data. We validate our model on both simulated and publicly available data to show that it can extract cell type specific information from clump data. …”

Segmentation of cell clumps for quantitative analysis. by Li, S, Buehnemann, C, Hassan, B, Noble, J

“…The increasing amounts of microscopy data generated in cell biology requires the development of automated tools for the quantitative analysis of images. …”

Geochemical, Biological, and Clumped Isotopologue Evidence for Substantial Microbial Methane Production Under Carbon Limitation in Serpentinites of the Samail Ophiolite, Oman by Nothaft, Daniel B, Templeton, Alexis S, Rhim, Jeemin H, Wang, David T, Labidi, Jabrane, Miller, Hannah M, Boyd, Eric S, Matter, Juerg M, Ono, Shuhei, Young, Edward D, Kopf, Sebastian H, Kelemen, Peter B, Conrad, Mark E

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Nonequilibrium clumped isotope signals in microbial methane by Wang, David T., Gruen, Danielle Sarah, Lollar, Barbara Sherwood, Hinrichs, Kai-Uwe, Stewart, Lucy C., Holden, James F., Hristov, Alexander N., Pohlman, John W., Morrill, Penny L., Könneke, Martin, Delwiche, Kyle Brook, Reeves, Eoghan, Sutcliffe, Chelsea N., Ritter, Daniel J., Seewald, Jeffrey S., McIntosh, Jennifer C., Kubo, Michael D., Cardace, Dawn, Hoehler, Tori M., Ono, Shuhei, Hemond, Harold F

“…Although isotopic compositions of methane have traditionally aided source identification, the abundance of its multiply-substituted “clumped” isotopologues, e.g., 13CH3D, has recently emerged as a proxy for determining methane-formation temperatures; however, the impact of biological processes on methane’s clumped isotopologue signature is poorly constrained. …”
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Distinctive Biological Properties between Mesenchymal Stem Cell Spheroids and Clumps of Mesenchymal Stem Cells/Extracellular Matrix Complexes in 3D Culture Systems by Mai Yoshino, Mikihito Kajiya, Hiroki Yoshii, Shin Morimoto, Susumu Horikoshi, Misako Tari, Tomoyuki Iwata, Kazuhisa Ouhara, Toshinori Ando, Tetsuya Yoshimoto, Tomoaki Shintani, Noriyoshi Mizuno

“…MSC spheroid culture is widely adopted to study the biological properties of MSCs in a 3D context. In contrast, we previously developed 3D clumps of MSC/ECM complexes termed C-MSCs. …”
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Predicted glycosyltransferases promote development and prevent spurious cell clumping in the choanoflagellate S. rosetta by Laura A Wetzel, Tera C Levin, Ryan E Hulett, Daniel Chan, Grant A King, Reef Aldayafleh, David S Booth, Monika Abedin Sigg, Nicole King

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STUDIES ON THE BREEDING STRUCTURE OF TREE SPECIES IN THE TROPICAL RAIN FOREST. I: FAMILY CLUMPS AND INTRAPOPULATION DIFFERENTIATION by KAN-ICHI SAKAI

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Photosynthetically Active Radiation and Foliage Clumping Improve Satellite-Based NIRv Estimates of Gross Primary Production by Iolanda Filella, Adrià Descals, Manuela Balzarolo, Gaofei Yin, Aleixandre Verger, Hongliang Fang, Josep Peñuelas

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Combined effects of soil 3D spatial heterogeneity and biotic spatial heterogeneity (plant clumping) on ecosystem processes in grasslands by O. Vindušková, G. Deckmyn, M. Bortier, H. J. De Boeck, Y. Liu, I. Nijs

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Physicochemical Conditions of the Devonian-Jurassic Continental Deep Biosphere Tracked by Carbonate Clumped Isotope Temperatures of Granite-Hosted Carbonate Veins by Adhipa Herlambang, Cédric M. John, Henrik Drake

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Laboratory-grown coccoliths exhibit no vital effect in clumped isotope (Δ47) composition on a range of geologically relevant temperatures by Katz, A, Bonifacie, M, Hermoso, M, Cartigny, P, Calmels, D

“…The carbonate clumped isotope (or Δ47) thermometer relies on the temperature dependence of the abundance of 13C18O16O22− ion groups within the mineral lattice. …”

Pruning and thresholding approach for methylation risk scores in multi-ancestry populations by Junyu Chen, Evan Gatev, Todd Everson, Karen N. Conneely, Nastassja Koen, Michael P. Epstein, Michael S. Kobor, Heather J. Zar, Dan J. Stein, Anke Hüls

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New tools for the investigation of muscle fiber-type spatial distributions across histological sections by Anna K. Redmond, Tilman M. Davies, Matthew R. Schofield, Philip W. Sheard

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Xenotransplantation of cryopreserved human clumps of mesenchymal stem cells/extracellular matrix complexes pretreated with IFN-γ induces rat calvarial bone regeneration by Tomoya Ogawa, Mikihito Kajiya, Susumu Horikoshi, Hiroki Yoshii, Mai Yoshino, Souta Motoike, Shin Morimoto, Hisakatsu Sone, Tomoyuki Iwata, Kazuhisa Ouhara, Shinji Matsuda, Noriyoshi Mizuno

“…Both C-MSCs and C-MSCsγ were cryopreserved for 2 days and then thawed to obtain Cryo-C-MSCs and Cryo-C-MSCsγ, respectively. The biological properties of those cell clumps were assessed in vitro. …”
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The Small Protein ScrA Influences Staphylococcus aureus Virulence-Related Processes via the SaeRS System by Marcus A. Wittekind, Paul Briaud, Jayanna L. Smith, Julia R. Tennant, Ronan K. Carroll

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Construction of a New Fusion Protein Vector Associated to Fibronectin Binding Protein A and Clumping Factor A derived from Staphylococcus aureus NCTC8325 by Jamshid Faghri, Kamran Pooshang Bagheri, Delavar Shahbaz Zadeh, Rahmatolah Yazdani, Hamid Mirmohammad Sadeghi, Sharareh Moghim

“…This project is being continued to study the expression and biological activity of the fusion protein in a cell culture model.…”
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Genetics of cerebral malaria: pathogenesis, biomarkers and emerging therapeutic interventions by Lydia Nkuah Nortey, Alberta Serwah Anning, Gideon Kwesi Nakotey, Abdala Mumuni Ussif, Yeboah Kwaku Opoku, Silas Acheampong Osei, Benjamin Aboagye, George Ghartey-Kwansah

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The Correlation between Clumping Factor A Gene Expression in Biofilm Formation and Antibiotic Resistance Among Staphylococcus aureus Isolated from Urine Samples of Imam Khomeini Ho... by Leila Ghasem Azizi, Arash Ghasem Azizi, Behzad Hemati, Monir Ebadi

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Retrieval of Aerodynamic Parameters in Rubber Tree Forests Based on the Computer Simulation Technique and Terrestrial Laser Scanning Data by Zhixian Huang, Xiao Huang, Jiangchuan Fan, Markus P. Eichhorn, Feng An, Bangqian Chen, Lin Cao, Zhengli Zhu, Ting Yun

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