Repetitive sequence variation and dynamics in the ribosomal DNA array of Saccharomyces cerevisiae as revealed by whole-genome resequencing by James, Stephen A., O’Kelly, Michael J. T., Carter, David M., Davey, Robert P., Oudenaarden, Alexander van, Roberts, Ian N.

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Disclosing pathogenic genetic variants to research participants: Quantifying an emerging ethical responsibility by Cassa, Christopher A., Savage, Sarah K., Taylor, Patrick L., Green, Robert C., McGuire, Amy L., Mandl, Kenneth D.

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High-resolution DNA-binding specificity analysis of yeast transcription factors by Zhu, Cong, Byers, Kelsey J.R.P., McCord, Rachel P., Shi, Zhenwei, Berger, Michael F., Newburger, Daniel E., Saulrieta, Katrina, Smith, Zachary, Shah, Mita V., Radhakrishnan, Mathangi, Philippakis, Anthony A., Hu, Yanhui, De Masi, Federico, Pacek, Marcin, Rolfs, Andreas, Murthy, Tal, LaBaer, Joshua, Bulyk, Martha L.

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Barcoding bias in high-throughput multiplex sequencing of miRNA by Alon, Shahar, Vigneault, Francois, Eminaga, Seda, Christodoulou, Danos C., Seidman, Jonathan G., Church, George M., Eisenberg, Eli

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Unusually effective microRNA targeting within repeat-rich coding regions of mammalian mRNAs by Schnall-Levin, Michael, Rissland, Olivia S., Johnston, Wendy K., Perrimon, Norbert, Bartel, David, Berger Leighton, Bonnie

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Inference of RhoGAP/GTPase regulation using single-cell morphological data from a combinatorial RNAi screen by Nir, Oaz, Bakal, Chris, Perrimon, Norbert, Berger, Bonnie

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Instrumenting the health care enterprise for discovery research in the genomic era by Kohane, Isaac, Murphy, Shawn N., Churchill, Susanne, Bry, Lynn, Chueh, Henry, Weiss, Scott, Lazarus, Ross, Zeng, Qing, Dubey, Anil, Gainer, Vivian, Mendis, Michael, Glaser, John

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Systematic identification of edited microRNAs in the human brain by Alon, Shahar, Mor, Eyal, Vigneault, Francois, Church, George M., Locatelli, Franco, Galeano, Federica, Gallo, Angela, Shomron, Noam, Eisenberg, Eli

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Cdc15 integrates Tem1 GTPase-mediated spatial signals with Polo kinase-mediated temporal cues to activate mitotic exit by Rock, Jeremy Michael, Amon, Angelika B

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The protein phosphatase 2A functions in the spindle position checkpoint by regulating the checkpoint kinase Kin4 by Chan, Leon Y., Amon, Angelika B

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Extensive alternative polyadenylation during zebrafish development by Ulitsky, Igor, Shkumatava, Alena, Jan, Calvin H., Subtelny, Alexander Orest, Koppstein, David Neal Pira, Bell, George W., Sive, Hazel L., Bartel, David

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ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia by Kheradpour, Pouya, Kellis, Manolis

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GENCODE: The reference human genome annotation for The ENCODE Project by Lin, Michael F., Kellis, Manolis

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Somatic rearrangements across cancer reveal classes of samples with distinct patterns of DNA breakage and rearrangement-induced hypermutability by Drier, Yotam, Lawrence, Michael S., Carter, Scott L., Stewart, Chip, Gabriel, Stacey B., Meyerson, Matthew L., Beroukhim, Rameen, Getz, Gad, Lander, Eric Steven

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Constitutive nuclear lamina-genome interactions are highly conserved and associated with A/T-rich sequence by Meuleman, Wouter, Peric-Hupkes, Daan, Kind, Jop, Beaudry, Jean-Bernard, Pagie, Ludo, Kellis, Manolis, Reinders, Marcel, Wessels, Lodewyk, van Steensel, Bas

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Systematic dissection of regulatory motifs in 2000 predicted human enhancers using a massively parallel reporter assay by Kheradpour, Pouya, Kellis, Manolis, Ernst, Jason, Melnikov, Alexandre, Rogov, Peter, Wang, Li, Zhang, Xiaolan, Alston, Jessica, Mikkelsen, Tarjei Sigurd

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HCFC1 is a common component of active human CpG-island promoters and coincides with ZNF143, THAP11, YY1, and GABP transcription factor occupancy by JnBaptiste, Courtney Kenneil, Michaud, Joelle, Praz, Viviane, James Faresse, Nicole, Tyagi, Shweta, Schutz, Frederic, Herr, Winship

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Interplay between chromatin state, regulator binding, and regulatory motifs in six human cell types by Kellis, Manolis, Ernst, Jason

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Structure-based whole-genome realignment reveals many novel noncoding RNAs by Will, Sebastian, Berger, Bonnie, Yu, Michael

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A dynamic H3K27ac signature identifies VEGFA-stimulated endothelial enhancers and requires EP300 activity by Day, Daniel Sindt, Park, Peter J., Zhang, Bing, Ho, Joshua W. K., Song, Lingyun, Cao, Jingjing, Christdoulou, Danos, Seidman, Jonathan G., Crawford, Gregory E., Pu, William T.

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