Mechanisms affecting the gut of preterm infants in enteral feeding trials by Embleton, N, Berrington, J, Dorling, J, Ewer, A, Juszczak, E, Kirby, J, Lamb, C, Lanyon, C, McGuire, W, Probert, C, Rushton, S, Shirley, M, Stewart, C, Cummings, S

“…Participation in MAGPIE does not change the main trial protocols and uses non-invasive sampling of stool and urine, along with any residual resected gut tissue if infants required surgery. Trial interventions may involve effects on gut microbes, metabolites (e.g., short-chain fatty acids), and aspects of host immune function. …”

The effect of Acacia senegal as potential prebiotic on obese gut microbiota by Sarbini, Shahrul Razid

“…Gut microbiota is able to affect body weight by fermenting dried fibers and generating short chain fatty acids (SCFA). …”

Intestinal injury and the gut microbiota in patients with Plasmodium falciparum malaria by Sriboonvorakul, N, Chotivanich, K, Silachamroon, U, Phumratanaprapin, W, Adams, JH, Dondorp, AM, Leopold, SJ

“…<p>The pathophysiology of severe falciparum malaria involves a complex interaction between the host, parasite, and gut microbes. In this review, we focus on understanding parasite-induced intestinal injury and changes in the human intestinal microbiota composition in patients with&nbsp;<em>Plasmodium falciparum</em>&nbsp;malaria. …”

Investigating the longitudinal dynamics of the human gut microbiome and immune system by Bi, Haixin Sarah

“…We then intersected these data with data from African locals and contextualized our results via reanalysis of larger, published datasets on travelers’ microbiomes, to build a fuller picture of what happens to our gut microbes when we travel. In the second chapter, I describe an analysis of a forthcoming microbiome data resource from our lab, in which I examined and quantified the diversity of antiphage defense capabilities at the strain level within the gut microbiome. …”
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Engineering the human gut microbiome through personalized dietary interventions by Nguyen, Le Thanh Tu.

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Co-evolution and Co-speciation of Host-Gut Bacteria Systems by Groussin, Mathieu, Mazel, Florent, Alm, Eric J

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Co-evolution and Co-speciation of Host-Gut Bacteria Systems by Groussin, Mathieu, Mazel, Florent, Alm, Eric J.

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Structural characterization of glycyl radical enzymes in the human gut microbiome by Dawson, Christopher Daniel.

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Dynamic Colonization of Microbes and Their Functions after Fecal Microbiota Transplantation for Inflammatory Bowel Disease by Chu, Nathaniel D, Crothers, Jessica W, Nguyen, Le TT, Kearney, Sean M, Smith, Mark B, Kassam, Zain, Collins, Cheryl, Xavier, Ramnik, Moses, Peter L, Alm, Eric J

“…<jats:p>Fecal microbiota transplantation (FMT)—transferring fecal microbes from a healthy donor to a sick patient—has shown promise for gut diseases such as inflammatory bowel disease. …”
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Fermentation of gum arabic by gut microbiota using in vitro colon model by Ahallil, Hammad, Abdullah, Aminah, Maskat, Mohamad Yusof, Sarbini, Shahrul R.

“…At birth, the human colon is rapidly colonized by gut microbes. Owing to their vast number and their capacity to ferment prebiotics, these gastrointestinal microbes act as an environmental factor that affects the host’s physiology and metabolism, particularly in the context of obesity and its related metabolic disorders. …”

Gut-associated microbial symbionts of the marsh fiddler crab, Uca pugnax by Gulmann, Lara K.

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Analysis of 1135 gut metagenomes identifies sex-specific resistome profiles by Sinha, Trishla, Vich Vila, Arnau, Garmaeva, Sanzhima, Jankipersadsing, Soesma A., Imhann, Floris, Collij, Valerie, Bonder, Marc Jan, Jiang, Xiaofang, Gurry, Thomas Jerome, Alm, Eric J, D’Amato, Mauro, Weersma, Rinse K., Scherjon, Sicco, Wijmenga, Cisca, Fu, Jingyuan, Kurilshikov, Alexander, Zhernakova, Alexandra

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Population study of the gut microbiome: associations with diet, lifestyle, and cardiometabolic disease by Walker, Rebecca L., Vlamakis, Hera, Lee, Jonathan W. J., Besse, Luke A., Xanthakis, Vanessa, Vasan, Ramachandran S., Shaw, Stanley Y, Xavier, Ramnik Joseph

“…Abstract Background The human gut harbors trillions of microbes that play dynamic roles in health. …”
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Metabolic nanoregulator remodels gut microenvironment for treatment of inflammatory bowel disease by Xu, Ting, Ning, Xiaogang, Wu, Jiayan, Wang, Qian, Wang, Zhifei, Chen, Zhiqing, Tang, Xiaoxian, Bai, Peirong, Pu, Kanyi, Li, Liping, Zhang, Ruiping

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Isolation and identification of polystyrene degrading bacteria from zophobas morio’s gut by Tan, Kian Meng, Mohd Fauzi, Noor Akhmazillah, Mohd Kassim, Angzzas Sari, A. Razak, Aliff Hisyam, Kamarudin, Kamarul Rahim

“…It has been observed that the beetle larvae feed on plastic packages, and this has drawn the researcher’s attention towards the complex system within the larvae’s gut where relationships between fungi, bacteria, and the insect host have been established. …”
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Isolation and identification of polystyrene degrading bacteria from zophobas morio’s gut by Kian, Meng Tan, Mohd Fauzi, Noor Akhmazillah, Mohd Kassim, Angzzas Sari, A. Razak, Aliff Hisyam, Kamarudin, Kamarul Rahim

“…It has been observed that the beetle larvae feed on plastic packages, and this has drawn the researcher’s attention towards the complex system within the larvae’s gut where relationships between fungi, bacteria, and the insect host have been established. …”
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A tripartite of immune-, epithelial-, and nervous-systems in the homeostatic regulation of the gut by Chng, Songhui

“…The ENS controls many aspects of gut physiology, including mucosal immunity. The major cellular component of the ENS is the enteric glia cell (EGC). …”
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Computational prediction of health status from the human gut microbiome and metabolome by Dawkins, Jennifer

“…However, there is growing evidence that the gut metabolome may provide crucial information that cannot be gained from microbial composition alone, as metabolites provide the means by which host cells and microbe cells communicate with each-other. …”
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Integrative multiomics analysis reveals host-microbe-metabolite interplays associated with the aging process in Singaporeans by Chen, Liwei, Zheng, Tingting, Yang, Yifan, Chaudhary, Prem Prashant, Teh, Jean Pui Yi, Cheon, Bobby Kyungbeom, Moses, Daniela, Schuster, Stephan Christoph, Schlundt, Joergen, Li, Jun, Conway, Patricia Lynne

“…Our results demonstrated aging-associated changes in the gut and oral microbiomes, as well as the connections between metabolites and host-microbe interactions, thereby deepening the understanding of alterations in the human microbiome during the aging process in a Singapore population.…”
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microbeMASST: a taxonomically informed mass spectrometry search tool for microbial metabolomics data by Zuffa, Simone, Schmid, Robin, Bauermeister, Anelize, Gomes, Paulo Wender P., Caraballo-Rodriguez, Andres M., El Abiead, Yasin, Aron, Allegra T., Gentry, Emily C., Zemlin, Jasmine, Meehan, Michael J., Avalon, Nicole E., Cichewicz, Robert H., Buzun, Ekaterina, Terrazas, Marvic Carrillo, Hsu, Chia-Yun, Oles, Renee, Ayala, Adriana Vasquez, Zhao, Jiaqi, Chu, Hiutung, Kuijpers, Mirte C. M., Jackrel, Sara L., Tugizimana, Fidele, Nephali, Lerato Pertunia, Dubery, Ian A., Madala, Ntakadzeni Edwin, Moreira, Eduarda Antunes, Costa-Lotufo, Leticia Veras, Lopes, Norberto Peporine, Rezende-Teixeira, Paula, Jimenez, Paula C., Rimal, Bipin, Patterson, Andrew D., Traxler, Matthew F., Pessotti, Rita de Cassia, Alvarado-Villalobos, Daniel, Tamayo-Castillo, Giselle, Chaverri, Priscila, Escudero-Leyva, Efrain, Quiros-Guerrero, Luis-Manuel, Bory, Alexandre Jean, Joubert, Juliette, Rutz, Adriano, Wolfender, Jean-Luc, Allard, Pierre-Marie, Sichert, Andreas, Pontrelli, Sammy, Pullman, Benjamin S., Bandeira, Nuno, Gerwick, William H., Gindro, Katia, Massana-Codina, Josep, Wagner, Berenike C., Forchhammer, Karl, Petras, Daniel, Aiosa, Nicole, Garg, Neha, Liebeke, Manuel, Bourceau, Patric, Kang, Kyo Bin, Gadhavi, Henna, de Carvalho, Luiz Pedro Sorio, Silva Dos Santos, Mariana, Pérez-Lorente, Alicia Isabel, Molina-Santiago, Carlos, Romero, Diego, Franke, Raimo, Brönstrup, Mark, de León, Arturo Vera Ponce, Pope, Phillip Byron, La Rosa, Sabina Leanti, La Barbera, Giorgia, Roager, Henrik M., Laursen, Martin Frederik, Hammerle, Fabian, Siewert, Bianka, Peintner, Ursula, Licona-Cassani, Cuauhtemoc, Rodriguez-Orduña, Lorena, Rampler, Evelyn, Hildebrand, Felina, Koellensperger, Gunda, Schoeny, Harald, Hohenwallner, Katharina, Panzenboeck, Lisa, Gregor, Rachel, O'Neill, Ellis Charles, Roxborough, Eve Tallulah, Odoi, Jane, Bale, Nicole J., Ding, Su, Sinninghe Damsté, Jaap S., Guan, Xue Li, Cui, Jerry J., Ju, Kou-San, Silva, Denise Brentan, Silva, Fernanda Motta Ribeiro, da Silva, Gilvan Ferreira, Koolen, Hector H. F., Grundmann, Carlismari, Clement, Jason A., Mohimani, Hosein, Broders, Kirk, McPhail, Kerry L., Ober-Singleton, Sidnee E., Rath, Christopher M., McDonald, Daniel, Knight, Rob, Wang, Mingxun, Dorrestein, Pieter C.

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