Deep learning methods for genome-based prediction of drug resistance in Mycobacterium tuberculosis by Wang, C

“…The conventional gold standard, bacterial culture testing, can take up to six weeks to get results, potentially leading to incorrect treatments and worsened patient outcomes. …”

The Quest for Orthologs orthology benchmark service in 2022 by Nevers, Y, Jones, TEM, Jyothi, D, Yates, B, Ferret, M, Portell-Silva, L, Codo, L, Cosentino, S, Marcet-Houben, M, Vlasova, A, Poidevin, L, Kress, A, Hickman, M, Persson, E, Piližota, I, Guijarro-Clarke, C, the OpenEBench team the Quest for Orthologs Consortium, Iwasaki, W, Lecompte, O, Sonnhammer, E, Roos, DS, Gabaldón, T, Thybert, D, Thomas, PD, Emms, DM

“…The Orthology Benchmark Service (https://orthology.benchmarkservice.org) is the gold standard for orthology inference evaluation, supported and maintained by the Quest for Orthologs consortium. …”

New developments for the Quest for Orthologs benchmark service by Altenhoff, A, Nevers, Y, Tran, V, Jyothi, D, Martin, M, Cosentino, S, Majidian, S, Marcet-Houben, M, Fuentes-Palacios, D, Persson, E, Walsh, T, Lecompte, O, Gabaldón, T, Kelly, S, Hu, Y, Iwasaki, W, Capella-Gutierrez, S, Dessimoz, C, Thomas, P, Ebersberger, I, Sonnhammer, E

“…The web server allows different inference methods to be compared in a standardized way using the same proteome data. The benchmark results are useful for developing new methods and can help researchers to guide their choice of orthology method for applications in comparative genomics and phylogenetic analysis. …”