peaksat: an R package for ChIP-seq peak saturation analysis

peaksat: an R package for ChIP-seq peak saturation analysis

Abstract Background Epigenomic profiling assays such as ChIP-seq have been widely used to map the genome-wide enrichment profiles of chromatin-associated proteins and posttranslational histone modifications. Sequencing depth is a key parameter in experimental design and quality control. However, due...

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Bibliographic Details
Main Authors: Joseph R Boyd, Cong Gao, Kathleen Quinn, Andrew Fritz, Janet Stein, Gary Stein, Karen Glass, Seth Frietze
Format: Article
Language:English
Published: BMC 2023-01-01
Series:BMC Genomics
Subjects:
Peak saturation
Read depth estimate
ChIP-Seq
Online Access:https://doi.org/10.1186/s12864-023-09109-7

Internet

https://doi.org/10.1186/s12864-023-09109-7

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