Rapid Identification of Relevant Microbial Strains by Identifying Multiple Marker Single Nucleotide Polymorphisms via Amplicon Sequencing: Epidemic Monkeypox Virus as a Proof of Concept

Rapid Identification of Relevant Microbial Strains by Identifying Multiple Marker Single Nucleotide Polymorphisms via Amplicon Sequencing: Epidemic Monkeypox Virus as a Proof of Concept

ABSTRACT Despite the proven value of applying genomic data for epidemiological purposes, commonly used high-throughput sequencing formats are not adapted to the response times required to intervene and finally control outbreaks. In this study, we propose a fast alternative to whole-genome sequencing...

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Bibliographic Details
Main Authors: Sergio Buenestado-Serrano, Marta Herranz, Rosalía Palomino-Cabrera, Cristina Rodríguez-Grande, Daniel Peñas-Utrilla, Andrea Molero-Salinas, Cristina Veintimilla, Pilar Catalán, Roberto Alonso, Patricia Muñoz, Laura Pérez-Lago, Darío García de Viedma
Format: Article
Language:English
Published: American Society for Microbiology 2023-02-01
Series:Microbiology Spectrum
Subjects:
MPXV
monkeypox virus
nanopore
amplicons
sequencing
Online Access:https://journals.asm.org/doi/10.1128/spectrum.04196-22

Internet

https://journals.asm.org/doi/10.1128/spectrum.04196-22

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