A detailed workflow to develop QIIME2-formatted reference databases for taxonomic analysis of DNA metabarcoding data

A detailed workflow to develop QIIME2-formatted reference databases for taxonomic analysis of DNA metabarcoding data

Abstract Background The DNA metabarcoding approach has become one of the most used techniques to study the taxa composition of various sample types. To deal with the high amount of data generated by the high-throughput sequencing process, a bioinformatics workflow is required and the QIIME2 platform...

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Bibliographic Details
Main Authors: Benjamin Dubois, Frédéric Debode, Louis Hautier, Julie Hulin, Gilles San Martin, Alain Delvaux, Eric Janssen, Dominique Mingeot
Format: Article
Language:English
Published: BMC 2022-07-01
Series:BMC Genomic Data
Subjects:
Reference database
QIIME2
Bioinformatics workflow
Metabarcoding
High-throughput sequencing
ITS2
Online Access:https://doi.org/10.1186/s12863-022-01067-5

Internet

https://doi.org/10.1186/s12863-022-01067-5

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