euka: Robust tetrapodic and arthropodic taxa detection from modern and ancient environmental DNA using pangenomic reference graphs

euka: Robust tetrapodic and arthropodic taxa detection from modern and ancient environmental DNA using pangenomic reference graphs

Abstract Ancient environmental DNA (aeDNA) is a crucial source of information for past environmental reconstruction. However, the computational analysis of aeDNA involves the inherited challenges of ancient DNA (aDNA) and the typical difficulties of eDNA samples, such as taxonomic identification and...

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Bibliographic Details
Main Authors: Nicola Alexandra Vogel, Joshua Daniel Rubin, Mikkel Swartz, Juliette Vlieghe, Peter Wad Sackett, Anders Gorm Pedersen, Mikkel Winther Pedersen, Gabriel Renaud
Format: Article
Language:English
Published: Wiley 2023-11-01
Series:Methods in Ecology and Evolution
Subjects:
ancient environmental DNA
Bayesian
bioinformatics
paleoecology
pangenomics
software
Online Access:https://doi.org/10.1111/2041-210X.14214

Internet

https://doi.org/10.1111/2041-210X.14214

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