Omic applications to understand food system microbiomes
Understanding the microbial communities associated with food systems has traditionally used culture-based techniques that can provide a snapshot of the microorganisms present. However, this approach requires multiple media types and only allows for the identification of a limited number of culturabl...
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| Format: | Article |
| Language: | English |
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CSIRO Publishing
2022-01-01
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| Series: | Microbiology Australia |
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| Online Access: | https://www.publish.csiro.au/ma/pdf/MA22018 |
| _version_ | 1828162150039814144 |
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| author | Jessica Gray |
| author_facet | Jessica Gray |
| author_sort | Jessica Gray |
| collection | DOAJ |
| description | Understanding the microbial communities associated with food systems has traditionally used culture-based techniques that can provide a snapshot of the microorganisms present. However, this approach requires multiple media types and only allows for the identification of a limited number of culturable species. Culture-independent methods such as sequencing and omic techniques provide a deeper understanding of the microbial community, how they interact and function together across the entire food system. This review provides a brief introduction to omic techniques used in microbiome studies and touches on microbiome research that has been undertaken across the farm to fork continuum focusing on leafy vegetables where possible. |
| first_indexed | 2024-04-12T00:49:56Z |
| format | Article |
| id | doaj.art-09d18df71afb4bd6a00640581f19826b |
| institution | Directory Open Access Journal |
| issn | 1324-4272 2201-9189 |
| language | English |
| last_indexed | 2024-04-12T00:49:56Z |
| publishDate | 2022-01-01 |
| publisher | CSIRO Publishing |
| record_format | Article |
| series | Microbiology Australia |
| spelling | doaj.art-09d18df71afb4bd6a00640581f19826b2022-12-22T03:54:46ZengCSIRO PublishingMicrobiology Australia1324-42722201-91892022-01-014324951MA22018Omic applications to understand food system microbiomesJessica Gray0Microbes for One System Health (MOSH), Food Microbiology, Agriculture and Food, CSIRO, 39 Kessels Road, Coopers Plains, Qld 4108, Australia.Understanding the microbial communities associated with food systems has traditionally used culture-based techniques that can provide a snapshot of the microorganisms present. However, this approach requires multiple media types and only allows for the identification of a limited number of culturable species. Culture-independent methods such as sequencing and omic techniques provide a deeper understanding of the microbial community, how they interact and function together across the entire food system. This review provides a brief introduction to omic techniques used in microbiome studies and touches on microbiome research that has been undertaken across the farm to fork continuum focusing on leafy vegetables where possible.https://www.publish.csiro.au/ma/pdf/MA22018food systemsmetagenomicsmetaproteomicsmetatranscriptomics,microbiomesomic techniques |
| spellingShingle | Jessica Gray Omic applications to understand food system microbiomes Microbiology Australia food systems metagenomics metaproteomics metatranscriptomics,microbiomes omic techniques |
| title | Omic applications to understand food system microbiomes |
| title_full | Omic applications to understand food system microbiomes |
| title_fullStr | Omic applications to understand food system microbiomes |
| title_full_unstemmed | Omic applications to understand food system microbiomes |
| title_short | Omic applications to understand food system microbiomes |
| title_sort | omic applications to understand food system microbiomes |
| topic | food systems metagenomics metaproteomics metatranscriptomics,microbiomes omic techniques |
| url | https://www.publish.csiro.au/ma/pdf/MA22018 |
| work_keys_str_mv | AT jessicagray omicapplicationstounderstandfoodsystemmicrobiomes |