Assessing the impact of post-mortem damage and contamination on imputation performance in ancient DNA

Abstract Low-coverage imputation is becoming ever more present in ancient DNA (aDNA) studies. Imputation pipelines commonly used for present-day genomes have been shown to yield accurate results when applied to ancient genomes. However, post-mortem damage (PMD), in the form of C-to-T substitutions a...

Full description

Bibliographic Details
Main Authors: Antonio Garrido Marques, Simone Rubinacci, Anna-Sapfo Malaspinas, Olivier Delaneau, Bárbara Sousa da Mota
Format: Article
Language:English
Published: Nature Portfolio 2024-03-01
Series:Scientific Reports
Online Access:https://doi.org/10.1038/s41598-024-56584-3