Re-analysis of an outbreak of Shiga toxin-producing Escherichia coli O157:H7 associated with raw drinking milk using Nanopore sequencing

Re-analysis of an outbreak of Shiga toxin-producing Escherichia coli O157:H7 associated with raw drinking milk using Nanopore sequencing

Abstract The aim of this study was to compare Illumina and Oxford Nanopore Technology (ONT) sequencing data to quantify genetic variation to assess within-outbreak strain relatedness and characterise microevolutionary events in the accessory genomes of a cluster of 23 genetically and epidemiological...

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Bibliographic Details
Main Authors: David R. Greig, Vivienne Do Nascimento, David L. Gally, Saheer E. Gharbia, Timothy J. Dallman, Claire Jenkins
Format: Article
Language:English
Published: Nature Portfolio 2024-03-01
Series:Scientific Reports
Subjects:
Foodborne outbreak
Genomic epidemiology
STEC O157:H7
WGS
Nanopore
Illumina
Online Access:https://doi.org/10.1038/s41598-024-54662-0

Internet

https://doi.org/10.1038/s41598-024-54662-0

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