Genotyping-by-sequencing and SNP-arrays are complementary for detecting quantitative trait loci by tagging different haplotypes in association studies

Genotyping-by-sequencing and SNP-arrays are complementary for detecting quantitative trait loci by tagging different haplotypes in association studies

Abstract Background Single Nucleotide Polymorphism (SNP) array and re-sequencing technologies have different properties (e.g. calling rate, minor allele frequency profile) and drawbacks (e.g. ascertainment bias). This lead us to study their complementarity and the consequences of using them separate...

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Bibliographic Details
Main Authors: Sandra S. Negro, Emilie J. Millet, Delphine Madur, Cyril Bauland, Valérie Combes, Claude Welcker, François Tardieu, Alain Charcosset, Stéphane D. Nicolas
Format: Article
Language:English
Published: BMC 2019-07-01
Series:BMC Plant Biology
Subjects:
GWAS
Linkage disequilibrium
Genome coverage
Maize
High-throughput genotyping technologies
Online Access:http://link.springer.com/article/10.1186/s12870-019-1926-4

Internet

http://link.springer.com/article/10.1186/s12870-019-1926-4

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