Protocol for identifying differentially expressed genes using the RumBall RNA-seq analysis platform

Protocol for identifying differentially expressed genes using the RumBall RNA-seq analysis platform

Summary: Here, we present a protocol for the identification of differentially expressed genes through RNA sequencing analysis. Starting with FASTQ files from public datasets, this protocol leverages RumBall within a self-contained Docker system. We describe the steps for software setup, obtaining da...

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Bibliographic Details
Main Authors: Luis Augusto Eijy Nagai, Seohyun Lee, Ryuichiro Nakato
Format: Article
Language:English
Published: Elsevier 2024-03-01
Series:STAR Protocols
Subjects:
Bioinformatics
Sequence analysis
RNA-seq
Online Access:http://www.sciencedirect.com/science/article/pii/S2666166724000911

Internet

http://www.sciencedirect.com/science/article/pii/S2666166724000911

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