Systematic Evaluation of Whole Genome Sequence-Based Predictions of Salmonella Serotype and Antimicrobial Resistance

Systematic Evaluation of Whole Genome Sequence-Based Predictions of Salmonella Serotype and Antimicrobial Resistance

Whole-genome sequencing (WGS) is used increasingly in public-health laboratories for typing and characterizing foodborne pathogens. To evaluate the performance of existing bioinformatic tools for in silico prediction of antimicrobial resistance (AMR) and serotypes of Salmonella enterica, WGS-based g...

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Bibliographic Details
Main Authors: Ashley L. Cooper, Andrew J. Low, Adam G. Koziol, Matthew C. Thomas, Daniel Leclair, Sandeep Tamber, Alex Wong, Burton W. Blais, Catherine D. Carrillo
Format: Article
Language:English
Published: Frontiers Media S.A. 2020-04-01
Series:Frontiers in Microbiology
Subjects:
Salmonella
antimicrobial resistance
serotyping
whole-genome sequence
nuoF
phenotype
Online Access:https://www.frontiersin.org/article/10.3389/fmicb.2020.00549/full

Internet

https://www.frontiersin.org/article/10.3389/fmicb.2020.00549/full

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