Correlation between Phenotypic and In Silico Detection of Antimicrobial Resistance in <i>Salmonella enterica</i> in Canada Using Staramr

Correlation between Phenotypic and In Silico Detection of Antimicrobial Resistance in <i>Salmonella enterica</i> in Canada Using Staramr

Whole genome sequencing (WGS) of <i>Salmonella</i> supports both molecular typing and detection of antimicrobial resistance (AMR). Here, we evaluated the correlation between phenotypic antimicrobial susceptibility testing (AST) and in silico prediction of AMR from WGS in <i>Salmone...

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Bibliographic Details
Main Authors: Amrita Bharat, Aaron Petkau, Brent P. Avery, Jessica C. Chen, Jason P. Folster, Carolee A. Carson, Ashley Kearney, Celine Nadon, Philip Mabon, Jeffrey Thiessen, David C. Alexander, Vanessa Allen, Sameh El Bailey, Sadjia Bekal, Greg J. German, David Haldane, Linda Hoang, Linda Chui, Jessica Minion, George Zahariadis, Gary Van Domselaar, Richard J. Reid-Smith, Michael R. Mulvey
Format: Article
Language:English
Published: MDPI AG 2022-01-01
Series:Microorganisms
Subjects:
antimicrobial resistance
whole-genome sequencing
molecular epidemiology
AMR prediction
<i>Salmonella</i>
Online Access:https://www.mdpi.com/2076-2607/10/2/292

Internet

https://www.mdpi.com/2076-2607/10/2/292

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