RResolver: efficient short-read repeat resolution within ABySS

RResolver: efficient short-read repeat resolution within ABySS

Abstract Background De novo genome assembly is essential to modern genomics studies. As it is not biased by a reference, it is also a useful method for studying genomes with high variation, such as cancer genomes. De novo short-read assemblers commonly use de Bruijn graphs, where nodes are sequences...

Full description

Bibliographic Details
Main Authors: Vladimir Nikolić, Amirhossein Afshinfard, Justin Chu, Johnathan Wong, Lauren Coombe, Ka Ming Nip, René L. Warren, Inanç Birol
Format: Article
Language:English
Published: BMC 2022-06-01
Series:BMC Bioinformatics
Subjects:
Short reads
De novo assembly
Repeat resolution
Scalable
Bloom filters
Online Access:https://doi.org/10.1186/s12859-022-04790-z

Internet

https://doi.org/10.1186/s12859-022-04790-z

Similar Items