Identification of highly variable sequence fragments in unmapped reads for rapid bacterial genotyping
Abstract Background Bacterial genotyping is a crucial process in outbreak investigation and epidemiological studies. Several typing methods such as pulsed-field gel electrophoresis, multilocus sequence typing (MLST) and whole genome sequencing are currently used in routine clinical practice. However...
Main Authors: | , , , , |
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Format: | Article |
Language: | English |
Published: |
BMC
2022-12-01
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Series: | BMC Genomics |
Subjects: | |
Online Access: | https://doi.org/10.1186/s12864-022-08550-4 |