Evaluation of taxonomic classification and profiling methods for long-read shotgun metagenomic sequencing datasets

Evaluation of taxonomic classification and profiling methods for long-read shotgun metagenomic sequencing datasets

Abstract Background Long-read shotgun metagenomic sequencing is gaining in popularity and offers many advantages over short-read sequencing. The higher information content in long reads is useful for a variety of metagenomics analyses, including taxonomic classification and profiling. The developmen...

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Bibliographic Details
Main Authors: Daniel M. Portik, C. Titus Brown, N. Tessa Pierce-Ward
Format: Article
Language:English
Published: BMC 2022-12-01
Series:BMC Bioinformatics
Subjects:
Metagenomics
Taxonomic classifier
Taxonomic profiler
Long reads
PacBio
Nanopore
Online Access:https://doi.org/10.1186/s12859-022-05103-0

Internet

https://doi.org/10.1186/s12859-022-05103-0

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