Comparative proteomic analysis of silica-induced pulmonary fibrosis in rats based on tandem mass tag (TMT) quantitation technology.
Silicosis is a systemic disease characterized by chronic persistent inflammation and incurable pulmonary fibrosis with the underlying molecular mechanisms to be fully elucidated. In this study, we employed tandem mass tag (TMT) based on quantitative proteomics technology to detect differentially exp...
| Main Authors: | , , , , , , , , , , , |
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| Format: | Article |
| Language: | English |
| Published: |
Public Library of Science (PLoS)
2020-01-01
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| Series: | PLoS ONE |
| Online Access: | https://doi.org/10.1371/journal.pone.0241310 |
| _version_ | 1818590984010727424 |
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| author | Cunxiang Bo Xiao Geng Juan Zhang Linlin Sai Yu Zhang Gongchang Yu Zhenling Zhang Kai Liu Zhongjun Du Cheng Peng Qiang Jia Hua Shao |
| author_facet | Cunxiang Bo Xiao Geng Juan Zhang Linlin Sai Yu Zhang Gongchang Yu Zhenling Zhang Kai Liu Zhongjun Du Cheng Peng Qiang Jia Hua Shao |
| author_sort | Cunxiang Bo |
| collection | DOAJ |
| description | Silicosis is a systemic disease characterized by chronic persistent inflammation and incurable pulmonary fibrosis with the underlying molecular mechanisms to be fully elucidated. In this study, we employed tandem mass tag (TMT) based on quantitative proteomics technology to detect differentially expressed proteins (DEPs) in lung tissues of silica-exposed rats. A total of 285 DEPs (145 upregulated and 140 downregulated) were identified. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analyses were performed to predict the biological pathway and functional classification of the proteins. Results showed that these DEPs were mainly enriched in the phagosome, lysosome function, complement and the coagulation cascade, glutathione metabolism, focal adhesion and ECM-receptor interactions. To validate the proteomics data, we selected and analyzed the expression trends of six proteins including CD14, PSAP, GM2A, COL1A1, ITGA8 and CLDN5 using parallel reaction monitoring (PRM). The consistent result between PRM and TMT indicated the reliability of our proteomic data. These findings will help to reveal the pathogenesis of silicosis and provide potential therapeutic targets. Data are available via ProteomeXchange with identifier PXD020625. |
| first_indexed | 2024-12-16T10:05:13Z |
| format | Article |
| id | doaj.art-1afb6dc52d884512bdc5ad56206b4cfc |
| institution | Directory Open Access Journal |
| issn | 1932-6203 |
| language | English |
| last_indexed | 2024-12-16T10:05:13Z |
| publishDate | 2020-01-01 |
| publisher | Public Library of Science (PLoS) |
| record_format | Article |
| series | PLoS ONE |
| spelling | doaj.art-1afb6dc52d884512bdc5ad56206b4cfc2022-12-21T22:35:41ZengPublic Library of Science (PLoS)PLoS ONE1932-62032020-01-011510e024131010.1371/journal.pone.0241310Comparative proteomic analysis of silica-induced pulmonary fibrosis in rats based on tandem mass tag (TMT) quantitation technology.Cunxiang BoXiao GengJuan ZhangLinlin SaiYu ZhangGongchang YuZhenling ZhangKai LiuZhongjun DuCheng PengQiang JiaHua ShaoSilicosis is a systemic disease characterized by chronic persistent inflammation and incurable pulmonary fibrosis with the underlying molecular mechanisms to be fully elucidated. In this study, we employed tandem mass tag (TMT) based on quantitative proteomics technology to detect differentially expressed proteins (DEPs) in lung tissues of silica-exposed rats. A total of 285 DEPs (145 upregulated and 140 downregulated) were identified. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analyses were performed to predict the biological pathway and functional classification of the proteins. Results showed that these DEPs were mainly enriched in the phagosome, lysosome function, complement and the coagulation cascade, glutathione metabolism, focal adhesion and ECM-receptor interactions. To validate the proteomics data, we selected and analyzed the expression trends of six proteins including CD14, PSAP, GM2A, COL1A1, ITGA8 and CLDN5 using parallel reaction monitoring (PRM). The consistent result between PRM and TMT indicated the reliability of our proteomic data. These findings will help to reveal the pathogenesis of silicosis and provide potential therapeutic targets. Data are available via ProteomeXchange with identifier PXD020625.https://doi.org/10.1371/journal.pone.0241310 |
| spellingShingle | Cunxiang Bo Xiao Geng Juan Zhang Linlin Sai Yu Zhang Gongchang Yu Zhenling Zhang Kai Liu Zhongjun Du Cheng Peng Qiang Jia Hua Shao Comparative proteomic analysis of silica-induced pulmonary fibrosis in rats based on tandem mass tag (TMT) quantitation technology. PLoS ONE |
| title | Comparative proteomic analysis of silica-induced pulmonary fibrosis in rats based on tandem mass tag (TMT) quantitation technology. |
| title_full | Comparative proteomic analysis of silica-induced pulmonary fibrosis in rats based on tandem mass tag (TMT) quantitation technology. |
| title_fullStr | Comparative proteomic analysis of silica-induced pulmonary fibrosis in rats based on tandem mass tag (TMT) quantitation technology. |
| title_full_unstemmed | Comparative proteomic analysis of silica-induced pulmonary fibrosis in rats based on tandem mass tag (TMT) quantitation technology. |
| title_short | Comparative proteomic analysis of silica-induced pulmonary fibrosis in rats based on tandem mass tag (TMT) quantitation technology. |
| title_sort | comparative proteomic analysis of silica induced pulmonary fibrosis in rats based on tandem mass tag tmt quantitation technology |
| url | https://doi.org/10.1371/journal.pone.0241310 |
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