PMFFRC: a large-scale genomic short reads compression optimizer via memory modeling and redundant clustering

PMFFRC: a large-scale genomic short reads compression optimizer via memory modeling and redundant clustering

Abstract Background Genomic sequencing reads compressors are essential for balancing high-throughput sequencing short reads generation speed, large-scale genomic data sharing, and infrastructure storage expenditure. However, most existing short reads compressors rarely utilize big-memory systems and...

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Bibliographic Details
Main Authors: Hui Sun, Yingfeng Zheng, Haonan Xie, Huidong Ma, Xiaoguang Liu, Gang Wang
Format: Article
Language:English
Published: BMC 2023-11-01
Series:BMC Bioinformatics
Subjects:
Short reads data
Data compression
Fastq
Parallel algorithm
Online Access:https://doi.org/10.1186/s12859-023-05566-9

Internet

https://doi.org/10.1186/s12859-023-05566-9

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