Benchmarking commonly used software suites and analysis workflows for DIA proteomics and phosphoproteomics

Many software suites and spectral libraries have been developed for DIA proteomics data analysis. Here, the authors create benchmark data sets to evaluate four commonly used software tools combined with seven spectral libraries in both global proteomics and phosphoproteomics analysis.

Bibliographic Details
Main Authors: Ronghui Lou, Ye Cao, Shanshan Li, Xiaoyu Lang, Yunxia Li, Yaoyang Zhang, Wenqing Shui
Format: Article
Language:English
Published: Nature Portfolio 2023-01-01
Series:Nature Communications
Online Access:https://doi.org/10.1038/s41467-022-35740-1