Design of combination therapy for engineered bacterial therapeutics in non-small cell lung cancer

Abstract Synthetic biology enables the engineering of bacteria to safely deliver potent payloads to tumors for effective anti-cancer therapies. However, a central challenge for translation is determining ideal bacterial therapy candidates for specific cancers and integrating them with other drug tre...

Full description

Bibliographic Details
Main Authors: Dhruba Deb, Yangfan Wu, Courtney Coker, Tetsuhiro Harimoto, Ruoqi Huang, Tal Danino
Format: Article
Language:English
Published: Nature Portfolio 2022-12-01
Series:Scientific Reports
Online Access:https://doi.org/10.1038/s41598-022-26105-1
_version_ 1828164677112168448
author Dhruba Deb
Yangfan Wu
Courtney Coker
Tetsuhiro Harimoto
Ruoqi Huang
Tal Danino
author_facet Dhruba Deb
Yangfan Wu
Courtney Coker
Tetsuhiro Harimoto
Ruoqi Huang
Tal Danino
author_sort Dhruba Deb
collection DOAJ
description Abstract Synthetic biology enables the engineering of bacteria to safely deliver potent payloads to tumors for effective anti-cancer therapies. However, a central challenge for translation is determining ideal bacterial therapy candidates for specific cancers and integrating them with other drug treatment strategies to maximize efficacy. To address this, we designed a screening and evaluation pipeline for characterization of bacterial therapies in lung cancer models. We screened 10 engineered bacterial toxins across 6 non-small cell lung cancer patient-derived cell lines and identified theta toxin as a promising therapeutic candidate. Using a bacteria-spheroid co-culture system (BSCC), analysis of differentially expressed transcripts and gene set enrichment revealed significant changes in at least 10 signaling pathways with bacteria-producing theta toxin. We assessed combinatorial treatment of small molecule pharmaceutical inhibitors targeting 5 signaling molecules and of 2 chemotherapy drugs along with bacterially-produced theta toxin and showed improved dose-dependent response. This combination strategy was further tested and confirmed, with AKT signaling as an example, in a mouse model of lung cancer. In summary, we developed a pipeline to rapidly characterize bacterial therapies and integrate them with current targeted therapies for lung cancer.
first_indexed 2024-04-12T01:30:23Z
format Article
id doaj.art-1ea02c3efcf74f9cb07bea2d420aef0a
institution Directory Open Access Journal
issn 2045-2322
language English
last_indexed 2024-04-12T01:30:23Z
publishDate 2022-12-01
publisher Nature Portfolio
record_format Article
series Scientific Reports
spelling doaj.art-1ea02c3efcf74f9cb07bea2d420aef0a2022-12-22T03:53:31ZengNature PortfolioScientific Reports2045-23222022-12-011211910.1038/s41598-022-26105-1Design of combination therapy for engineered bacterial therapeutics in non-small cell lung cancerDhruba Deb0Yangfan Wu1Courtney Coker2Tetsuhiro Harimoto3Ruoqi Huang4Tal Danino5Department of Biomedical Engineering, Columbia UniversityDepartment of Biomedical Engineering, Columbia UniversityDepartment of Biomedical Engineering, Columbia UniversityDepartment of Biomedical Engineering, Columbia UniversityDepartment of Biomedical Engineering, Columbia UniversityDepartment of Biomedical Engineering, Columbia UniversityAbstract Synthetic biology enables the engineering of bacteria to safely deliver potent payloads to tumors for effective anti-cancer therapies. However, a central challenge for translation is determining ideal bacterial therapy candidates for specific cancers and integrating them with other drug treatment strategies to maximize efficacy. To address this, we designed a screening and evaluation pipeline for characterization of bacterial therapies in lung cancer models. We screened 10 engineered bacterial toxins across 6 non-small cell lung cancer patient-derived cell lines and identified theta toxin as a promising therapeutic candidate. Using a bacteria-spheroid co-culture system (BSCC), analysis of differentially expressed transcripts and gene set enrichment revealed significant changes in at least 10 signaling pathways with bacteria-producing theta toxin. We assessed combinatorial treatment of small molecule pharmaceutical inhibitors targeting 5 signaling molecules and of 2 chemotherapy drugs along with bacterially-produced theta toxin and showed improved dose-dependent response. This combination strategy was further tested and confirmed, with AKT signaling as an example, in a mouse model of lung cancer. In summary, we developed a pipeline to rapidly characterize bacterial therapies and integrate them with current targeted therapies for lung cancer.https://doi.org/10.1038/s41598-022-26105-1
spellingShingle Dhruba Deb
Yangfan Wu
Courtney Coker
Tetsuhiro Harimoto
Ruoqi Huang
Tal Danino
Design of combination therapy for engineered bacterial therapeutics in non-small cell lung cancer
Scientific Reports
title Design of combination therapy for engineered bacterial therapeutics in non-small cell lung cancer
title_full Design of combination therapy for engineered bacterial therapeutics in non-small cell lung cancer
title_fullStr Design of combination therapy for engineered bacterial therapeutics in non-small cell lung cancer
title_full_unstemmed Design of combination therapy for engineered bacterial therapeutics in non-small cell lung cancer
title_short Design of combination therapy for engineered bacterial therapeutics in non-small cell lung cancer
title_sort design of combination therapy for engineered bacterial therapeutics in non small cell lung cancer
url https://doi.org/10.1038/s41598-022-26105-1
work_keys_str_mv AT dhrubadeb designofcombinationtherapyforengineeredbacterialtherapeuticsinnonsmallcelllungcancer
AT yangfanwu designofcombinationtherapyforengineeredbacterialtherapeuticsinnonsmallcelllungcancer
AT courtneycoker designofcombinationtherapyforengineeredbacterialtherapeuticsinnonsmallcelllungcancer
AT tetsuhiroharimoto designofcombinationtherapyforengineeredbacterialtherapeuticsinnonsmallcelllungcancer
AT ruoqihuang designofcombinationtherapyforengineeredbacterialtherapeuticsinnonsmallcelllungcancer
AT taldanino designofcombinationtherapyforengineeredbacterialtherapeuticsinnonsmallcelllungcancer