Peak Scores Significantly Depend on the Relationships between Contextual Signals in ChIP-Seq Peaks

Peak Scores Significantly Depend on the Relationships between Contextual Signals in ChIP-Seq Peaks

Chromatin immunoprecipitation followed by massively parallel DNA sequencing (ChIP-seq) is a central genome-wide method for in vivo analyses of DNA-protein interactions in various cellular conditions. Numerous studies have demonstrated the complex contextual organization of ChIP-seq peak sequences an...

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Bibliographic Details
Main Authors: Oleg V. Vishnevsky, Andrey V. Bocharnikov, Elena V. Ignatieva
Format: Article
Language:English
Published: MDPI AG 2024-01-01
Series:International Journal of Molecular Sciences
Subjects:
chromatin immunoprecipitation with massively parallel sequencing
transcription factor binding sites
IUPAC motifs
co-binding of transcription factors
composite elements
multiple regression
Online Access:https://www.mdpi.com/1422-0067/25/2/1011

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https://www.mdpi.com/1422-0067/25/2/1011

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