Normalization and de-noising of single-cell Hi-C data with BandNorm and scVI-3D

Abstract Single-cell high-throughput chromatin conformation capture methodologies (scHi-C) enable profiling of long-range genomic interactions. However, data from these technologies are prone to technical noise and biases that hinder downstream analysis. We develop a normalization approach, BandNorm...

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Bibliographic Details
Main Authors: Ye Zheng, Siqi Shen, Sündüz Keleş
Format: Article
Language:English
Published: BMC 2022-10-01
Series:Genome Biology
Subjects:
Online Access:https://doi.org/10.1186/s13059-022-02774-z