SOAPsplice: genome-wide ab initio detection of splice junctions from RNA-Seq data

SOAPsplice: genome-wide ab initio detection of splice junctions from RNA-Seq data

RNA-Seq, a method using next generation sequencing technologies to sequence the transcriptome, facilitates genome-wide analysis of splice junction sites. In this paper, we introduce SOAPsplice, a robust tool to detect splice junctions using RNA-Seq data without using any information of known splice...

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Bibliographic Details
Main Authors: Songbo eHuang, Jinbo eZhang, Ruiqiang eLi, Wenqian eZhang, Zengquan eHe, Tak-Wah eLam, Zhiyu ePeng, Siu-Ming eYiu
Format: Article
Language:English
Published: Frontiers Media S.A. 2011-07-01
Series:Frontiers in Genetics
Subjects:
RNA-Seq
splice junction
spliced alignment
Online Access:http://journal.frontiersin.org/Journal/10.3389/fgene.2011.00046/full

Internet

http://journal.frontiersin.org/Journal/10.3389/fgene.2011.00046/full

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