Evaluation of EPISEQ SARS-CoV-2 and a Fully Integrated Application to Identify SARS-CoV-2 Variants from Several Next-Generation Sequencing Approaches

Evaluation of EPISEQ SARS-CoV-2 and a Fully Integrated Application to Identify SARS-CoV-2 Variants from Several Next-Generation Sequencing Approaches

Whole-genome sequencing has become an essential tool for real-time genomic surveillance of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) worldwide. The handling of raw next-generation sequencing (NGS) data is a major challenge for sequencing laboratories. We developed an easy-to-use w...

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Bibliographic Details
Main Authors: Nathalie Mugnier, Aurélien Griffon, Bruno Simon, Maxence Rambaud, Hadrien Regue, Antonin Bal, Gregory Destras, Maud Tournoud, Magali Jaillard, Abel Betraoui, Emmanuelle Santiago, Valérie Cheynet, Alexandre Vignola, Véronique Ligeon, Laurence Josset, Karen Brengel-Pesce
Format: Article
Language:English
Published: MDPI AG 2022-07-01
Series:Viruses
Subjects:
next-generation sequencing
SARS-CoV-2
variant identification
mutation screening
genome assembly
nextstrain clade
Online Access:https://www.mdpi.com/1999-4915/14/8/1674

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https://www.mdpi.com/1999-4915/14/8/1674

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