Transposable element finder (TEF): finding active transposable elements from next generation sequencing data

Transposable element finder (TEF): finding active transposable elements from next generation sequencing data

Abstract Background Detection of newly transposed events by transposable elements (TEs) from next generation sequence (NGS) data is difficult, due to their multiple distribution sites over the genome containing older TEs. The previously reported Transposon Insertion Finder (TIF) detects TE transposi...

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Bibliographic Details
Main Authors: Akio Miyao, Utako Yamanouchi
Format: Article
Language:English
Published: BMC 2022-11-01
Series:BMC Bioinformatics
Subjects:
Transposable element
Retrotransposon
Next generation sequence
Target site duplication
Tos17
Online Access:https://doi.org/10.1186/s12859-022-05011-3

Internet

https://doi.org/10.1186/s12859-022-05011-3

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