MTBseq: a comprehensive pipeline for whole genome sequence analysis of Mycobacterium tuberculosis complex isolates

MTBseq: a comprehensive pipeline for whole genome sequence analysis of Mycobacterium tuberculosis complex isolates

Analyzing whole-genome sequencing data of Mycobacterium tuberculosis complex (MTBC) isolates in a standardized workflow enables both comprehensive antibiotic resistance profiling and outbreak surveillance with highest resolution up to the identification of recent transmission chains. Here, we presen...

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Bibliographic Details
Main Authors: Thomas Andreas Kohl, Christian Utpatel, Viola Schleusener, Maria Rosaria De Filippo, Patrick Beckert, Daniela Maria Cirillo, Stefan Niemann
Format: Article
Language:English
Published: PeerJ Inc. 2018-11-01
Series:PeerJ
Subjects:
Next-generation sequencing
Mycobacterium tuberculosis complex
Phylogeny
Whole-genome sequencing
Automated analysis pipeline
Bacterial genome analysis
Online Access:https://peerj.com/articles/5895.pdf

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https://peerj.com/articles/5895.pdf

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